Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01750 ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTTGTTTGGGCGTAAAATCTGCCAATCCCGAAGACATTGAACGCGACGTTTTGGAAAAGGCTACTAAGAATGATTCAGTGACCGTTACTGAGGCTGAAGGTAGTGCCGAAGAAGAATGTTCTGATTTACCTGAAAATGTCGATCCATCGACTAATGCTAAAGCTGAACTTCATCAGAAGTTGAGAGCTGTTCAATTTGAAATTGATGCCGTTGCCTCCACCGTTGAGCGGTTGAGAAATGTGGAAAATAATGAAGAATGTAGTGATGCTGGTGAAGACGACTTGGTGTCGTCGTTTGCTGAGGTTGATTCCTCCAACAATTCAAATCTTCAGTGTGCTCTTGCTGCCGATAGGTTGAGGAGTCTGAAGAAGACGAAAGCTCAACTAGAGAAAGAGCTTTTGAATTTGTCCAAGGATGATGCTTCCAAAAGTGTTGAGGATGAACAATTGATCTTTAGTTTAGTTAGGGAAGAACGGAAGCCCAAGAGGAAGGTTAAAGAAGATAAAAAGTCAGACAAAAGCAAGGGAAAACGACTTAAGAAAGTTTCGTTTGACGATGATGTTGATTTTGATACTGTTCTAGATGCAGCTTCTGCCGGCTTTGTTGAAACAGAAAGGGATGAATTGGTGAGAAAAGGAATTTTAACCCCTTTTCATAAGTTAAAGGGCTTTGAGCGCCGTTTTCAACAACCAGAAACATCAGCTAGTCGTGATGCAGCTGAGGAGGAAAATGCTAGTGATCTTGCTGCTGCCAGTGTTGAAAGAGCTGCCAAATCTATGTATGAGGCAGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTCAAGATGCACCGAAGCTTGATGCACCCACTTTTCCATTTCGCAGGCTCAGGAAACCACTACAATCTTCCAAAGCTCTAGATAGAGAAATGGAGCTAAATAAAGATTCAAAAAGGAAGAAGAGGCGGCCTCTGCCTGGAAGAAAGTGGACCAAGCGTGTTTCTTGTGATGATACACATACGGAAGAAAGTGAAAATGCAGATGGTTGCTTAGATAGTTCCAGTTTTGAAAATTTAGAAGAACAAGGCATTGATCTTGATGATCATGAATCTTATGTAACGTTAGAAGGTGGGCTGAAAATCCCTGATAAGATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGACTTGGTAAAACTGTCCAGATCTTATCTTTTCTTGGTGCACTGCACTATAGTGGCATGTACAAACCTAGCATTATTGTCTGCCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTACCCAAAATTCCTTGTAGAGCTTTTACATGAATCGGCTCAAGATTCAGCTCCTAGGAAGAAGCGAGCTAAATCTGAAGAAACAGACTGTGAAACCAATAGTTCAAGTGACAATGATTATGAAAAAAGTGAACCATCTAGAAACACAAAAAAATGGGAATCCCTGATAAATCATGTCATGAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGATCAGTTGCTTGATATTCAATGGGGTTATGCAGTTCTTGACGAAGGGCATAGAATAAGGAATCCAAATGCCGAAGTTACCCTCGTTTGCAAGCAGCTACAAACTGTACATCGAATCATAATGACTGGTGCACCTATTCAGAATAAACTGACTGAACTATGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTCGAAGTTGAATTTGCAGTTCCTATAGCAGTTGGTGGGTATGCAAATGCTACACCTCTTCAAGTATCCACCGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGGATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAAGTATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTTGGTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACATCTTCTGGTCATGTTTATCGGAGAATGGATGGTCTTACTCCTGTTAAACAGAGAATGGCCTTAATAGATGAATTTAATGCCTCAAGTGAAATATTTATTTTCATTTTAACGACCAAAGTTGGGGGTTTGGGGACCAATCTTACAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAAATGATATGCAGGCCAGAGAGCGGGCTTGGCGTATTGGTCAGAAGCGGGATGTAACCGTGTATAGGTTGATAACACGGGGAACTATTGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACAAATAAGATATTGAAGAATCCACAACAGAAAAGGTTCTTTAAGGCCCGGGATATGAAAGATCTTTTCGTACTTAACGTGGATGGAGAAACTGGGTCAACTGAAACTTCAAATATTTTTAGTCAAATATCTGAAGAAGTGAATGTCATTGGGACACAGAAAGAAAATAAGGATAAGAATGAACATAGCCAAACTGCCAAACTGGATTCTGAGGATGTTGCAGTTAATAATGATGACAAGTCAGAGAGAGGATCTTGGGAGGGGAAGGGGAAAGAGAAGGTTGAACTTTATAACGGGGTTGATGATGGAACAGATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCGTGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAAGAGCAAGCATCCCAAGTTGCTCGAAGAGCTGCAGAAGCTTTACGTAAGTCACGAATGCTCAGAAGCCATGATAGTGTATCTGTTCCCACGTGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGTCAGAAGTTTGGTTCAACCGTGAATCCCCTATTGGTAAGTAAAAGCAAGGTATATGACGAGTTACCCAGCAAGGGAACGACAAAATTAAATGGATTCGCTGCTGGGGCATCCGCAGGTAAAGCTTTATCTTCTGTCGAACTTTTAGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCTGGGCTCGAACATCAGTCTAGCATGTTGTCAAGTTCCACGAATCAAGCAAGATCTGTAGATGTTAGATCTTCCAGGGCTACTGCAAGTTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCCAGCATAGTTCAGTATTTTAAGGAACGTATTCCCTCACAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCTCATTGGGTTCTGAAACCAGACTATCAATTCTGA 3675 0.4182 MEEEEDRILLSCLGVKSANPEDIERDVLEKATKNDSVTVTEAEGSAEEECSDLPENVDPSTNAKAELHQKLRAVQFEIDAVASTVERLRNVENNEECSDAGEDDLVSSFAEVDSSNNSNLQCALAADRLRSLKKTKAQLEKELLNLSKDDASKSVEDEQLIFSLVREERKPKRKVKEDKKSDKSKGKRLKKVSFDDDVDFDTVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQPETSASRDAAEEENASDLAAASVERAAKSMYEAARSRPTTKLLEPQDAPKLDAPTFPFRRLRKPLQSSKALDREMELNKDSKRKKRRPLPGRKWTKRVSCDDTHTEESENADGCLDSSSFENLEEQGIDLDDHESYVTLEGGLKIPDKIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQILSFLGALHYSGMYKPSIIVCPVTLLRQWKREANKWYPKFLVELLHESAQDSAPRKKRAKSEETDCETNSSSDNDYEKSEPSRNTKKWESLINHVMRSESGLLITTYEQLRILGDQLLDIQWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEVEFAVPIAVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVGQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTSSGHVYRRMDGLTPVKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEEVNVIGTQKENKDKNEHSQTAKLDSEDVAVNNDDKSERGSWEGKGKEKVELYNGVDDGTDILKSLFDANGIHSAVNHDLIMNAHDEEKMRLEEQASQVARRAAEALRKSRMLRSHDSVSVPTWTGRSGTAGAPSSVRQKFGSTVNPLLVSKSKVYDELPSKGTTKLNGFAAGASAGKALSSVELLAQIRGNQEKAIGAGLEHQSSMLSSSTNQARSVDVRSSRATASSSGLQPEVLIRQICTFIQQRGGSSDSASIVQYFKERIPSQDLALFKNLLKEIATLHKGSNGSHWVLKPDYQF 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01750 1224 PANTHER SNF2/RAD54 FAMILY MEMBER 159 1206 - -
Vian3g01750 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 900 IPR001650 -
Vian3g01750 1224 MobiDBLite consensus disorder prediction 479 510 - -
Vian3g01750 1224 CDD DEXHc_ERCC6 393 603 - -
Vian3g01750 1224 SMART helicmild6 767 850 IPR001650 -
Vian3g01750 1224 MobiDBLite consensus disorder prediction 1127 1150 - -
Vian3g01750 1224 FunFam Protein CHROMATIN REMODELING 8 371 653 - -
Vian3g01750 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 654 IPR027417 -
Vian3g01750 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 913 IPR027417 -
Vian3g01750 1224 MobiDBLite consensus disorder prediction 236 257 - -
Vian3g01750 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Vian3g01750 1224 Pfam Helicase conserved C-terminal domain 748 850 IPR001650 -
Vian3g01750 1224 FunFam DNA excision repair protein ERCC-6 661 941 - -
Vian3g01750 1224 MobiDBLite consensus disorder prediction 305 323 - -
Vian3g01750 1224 CDD SF2_C_SNF 736 861 - -
Vian3g01750 1224 MobiDBLite consensus disorder prediction 269 356 - -
Vian3g01750 1224 Gene3D - 369 653 IPR038718 -
Vian3g01750 1224 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Vian3g01750 1224 Coils Coil 1006 1033 - -
Vian3g01750 1224 SMART ultradead3 389 615 IPR014001 -
Vian3g01750 1224 CDD CSB_WHD 1157 1223 - -
Vian3g01750 1224 MobiDBLite consensus disorder prediction 334 351 - -
Vian3g01750 1224 MobiDBLite consensus disorder prediction 33 63 - -
Vian3g01750 1224 Coils Coil 122 149 - -
Vian3g01750 1224 MobiDBLite consensus disorder prediction 934 967 - -
Vian3g01750 1224 Gene3D - 660 962 IPR027417 -
Vian3g01750 1224 MobiDBLite consensus disorder prediction 1042 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01750 Vian-Chr3 19816460 19825247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01750 386 903 RAD5 or RAD16-like Gene Family AT1G02670 22.881 3.10e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian3g01750 SNF2_N 5.1e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01750 K10841 - gmx:100820025 2051.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01750 3 19816460 19825247 Vian3g01750 3 19816460 19825247 ECH