Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01748 ATGGCGGCAGCAGAAGAAGATTTCCCTGGAATTCGCGTCCGCGGGATGCAATTTTCCTATGAAGCGCAACAACCGCCGCTCTTCCTCGACTTCAACCTCAACGTCGAGCCTGGATCGCGGTGCCTCCTCGTCGGTGCCAACGGATCCGGTAAGACGACTTTGCTGAAGATTCTAGCGGGGAAGCATATGGTTGGAGGAAGAGATGTTGTGCGCGTGTTGAATGGTTCCGCTTTTCATGACACTCAACTCGTCTGTAGTGGAGATCTCGCTTATTTGGGCGGATCCTGGAGCAAAAACGTTGGCTCTGCTGGAGAAATTCCGCTTCAAGGAGACTTCTCTGCCGAACATATGATCTTTGGAGTTGAGGGTGCTGACCCAGATAGGAGAGACAAGTTAATTGAGCTGCTTGATATCGATCTGCAGTGGCGAATGCACAAGGTATCTGATGGCCAGCGGCGTCGAGTGCAAATCTGTCTTGGTCTTCTTTATCCATATAAGGTTCTCTTGCTTGATGAAGTCACTGTTGATCTGGATGTTGTGACTCGGATGGATTTGTTGGAATTCTTTAGGGAAGAATGTGAACAGAGAGAAGCTACAATAGTATATGCAACTCATATTTTTGATGGACTAGAGGCATGGGCAACTCATTTGGCATACATACAAGATGGTGAACTGAGAAGAGCAGAAAAGATATCAGATGTCAATGAGTTGAAATCTTCCACTAATCTGCTATCTGTTGTTGAGGACTGGCTCCGTGCTGAAACAAAAGGTGTAAAGAAGAAACCTGTCCAAAAGAATTTTGCGAGTTCTCCATTCTTTTCATCCAGACACATGGCCTATTATCGATAG 849 0.4653 MAAAEEDFPGIRVRGMQFSYEAQQPPLFLDFNLNVEPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVRVLNGSAFHDTQLVCSGDLAYLGGSWSKNVGSAGEIPLQGDFSAEHMIFGVEGADPDRRDKLIELLDIDLQWRMHKVSDGQRRRVQICLGLLYPYKVLLLDEVTVDLDVVTRMDLLEFFREECEQREATIVYATHIFDGLEAWATHLAYIQDGELRRAEKISDVNELKSSTNLLSVVEDWLRAETKGVKKKPVQKNFASSPFFSSRHMAYYR 282
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01748 282 PANTHER SKFA PEPTIDE EXPORT ATP-BINDING PROTEIN SKFE 11 249 - -
Vian3g01748 282 Gene3D - 10 264 IPR027417 -
Vian3g01748 282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 236 IPR027417 -
Vian3g01748 282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 247 IPR003439 GO:0005524
Vian3g01748 282 SMART AAA_5 37 224 IPR003593 GO:0016887
Vian3g01748 282 Pfam ABC transporter 30 174 IPR003439 GO:0005524
Vian3g01748 282 FunFam ABC transporter I family member 21 112 277 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian3g01748 Vian-Chr3 19806991 19809951 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01748 11 239 Calmodulin-binding Proteins AT2G36910 23.237 2.89e-09 55.8
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01748 3 19806991 19809951 Vian3g01748 3 19806991 19809951 ECH