Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01747 ATGGCGACGGCGGCGGAGCCAGAAGCGAAGACCTACTGGTGCCACGAATGCGATACGAGTGTGTCCCTCATGCTCCTTCCCTCGCCTCTTCTTTGTCCCCACTACCATATCTCCTTCCTCGAACTGATGGACTCTCCCTTCTCCCAAAACGACGTCGAATCACCCCTCTTTGATGTTTTCCAGGACGCTCTCTTACTCCTCTCCTCCAAGCCCCTCTCCGCCAAACCCCGCCTTCTCCCCTCCGTCAACGTCACACCCTCACTCCTTTTCGCGGTCGACCCCAACGACATCATTTTCTCCGCTGTGTGCAAAGACCAAATTTTCCTCGACACTGAGGCGAAACAGTTGCCCTGCAAACACCTCTTCCATGTCGATTGCATCACGCCGTCAACCTCCATGCATCGTGCCCGTTGTGCAGGCTACCATCTCTACAAATAA 438 0.5502 MATAAEPEAKTYWCHECDTSVSLMLLPSPLLCPHYHISFLELMDSPFSQNDVESPLFDVFQDALLLLSSKPLSAKPRLLPSVNVTPSLLFAVDPNDIIFSAVCKDQIFLDTEAKQLPCKHLFHVDCITPSTSMHRARCAGYHLYK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01747 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 139 IPR013083 -
Vian3g01747 145 SUPERFAMILY RING/U-box 101 136 - -
Vian3g01747 145 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01747 Vian-Chr3 19792846 19793283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01747 5 136 C3H Transcription Factor Family AT3G60080 29.949 9.43e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01747 K11982 - gmx:100775530 164.081