Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01745 ATGCATGAAACATGGGATCACTACTCAAATATTATTACTTCCTTGCCATTTTCAGCTCCAACCCCATCAAACCTATATCCAAAGCCAGCAACAGAAAACCAGTGCCTAAACATGGGGCAGAATGAAGTCTCTGATTGGATGGAGGAACACATTGATGACATCACCAAACACCTTGTTGAAGACTTACCAGAAACCACTTCTGATAGCTTGGTGCCAAATAACACAACAAGGGTTTCCCATCACAACCTTGTTCCCTCACTTTTACCCAACTTGATCAGTGAAAGAAAAGCTTCAGGCTTTAGACCCCAATTTGAGGCCATCACCAATGTTCACTCAGGTTTAGATCATAGCTACAATGTCTGTGATCAAGGGTTGAGCCTCATAAGCCTTCTAATGGAGTGTGCAGTGGCAATTTCAGTCGACAACCTGGGTGAGGCTCATAGGATGTTACTAGAGCTAACACAAATGGCCTCACCCTACAAAGCATCATGTGGTGAACGCGTTGTTGCTTATTTTACCAAGGCCATGACTTGCAGGGTCATGAATTCTTGGCTTGGGATGTGTTCCCCTTTGCTTGATCACAGAAACATTAACTCAGCATTCCAAGTCTTCAACAACGTTTCCCCTTTCATAAAATTTGCTCACTTCACTTCCAACCAGGCAATCCTTGAGGCAGTAAACCATTGTGACAGTATTCACATAATCGACTTGGACATCATGCAAGGCCTGCAATGGCCAGCTTTTTTCCATATATTAGCCACCAGAATGGAGGGTCCACCACAGGTAACCATGACATGCTTCGGAACCTCAACGGAACTCCTCGTTGAAACTGGGAAACAGCTCTCCAACTTTGCAAGAAGGCTTGGTATGTCATTCAAGTTCCACCCCATTGCAAGCAAGTTTGGGGAAGTAATCGATGTGTCTATGCTGCATGTAAAGCCTGGCGAGGCACTGGCAGTGCATTGGTTGCAGCATTCACTGTACGATGCAACTGGACCTGATTGGAAAACACTCAGGCTCCTTGAGGAGTTGGAGCCAAGAATAATCACCTTGGTGGAGCAAGATGTGAACCATGGAGGCTCATTCTTGGATCGTTTTGTGGGCTCCTTGCACTACTACTCCACCCTATTTGATTCTCTTGGAGCATACTTACACTTTGATGATGAAAACAGGCACCGTGTGGAGCATGCCCTTCTCTCTAGGGAAATCAACAATGTGTTGGCCATAGGAGGCCCTAAGAGGAACGGTGAAGACAAGTTTAGGCAGTGGAGAAGAGAGCTTGCTAACCACTATTTTCAGCAGATTCCCATGAGTGCCAATTCAATGGCTCAAGCTCAGTTGATATTGAACATGTTCTCACCAGCTTATGGGTATAGTCTTGCACAAGTTGATGGCACATTAAGGCTTGGATGGAAGGATACAAGTTTGTACACAGCTTCTGCATGGACCTGTTGTACTTCTAACTAG 1467 0.4519 MHETWDHYSNIITSLPFSAPTPSNLYPKPATENQCLNMGQNEVSDWMEEHIDDITKHLVEDLPETTSDSLVPNNTTRVSHHNLVPSLLPNLISERKASGFRPQFEAITNVHSGLDHSYNVCDQGLSLISLLMECAVAISVDNLGEAHRMLLELTQMASPYKASCGERVVAYFTKAMTCRVMNSWLGMCSPLLDHRNINSAFQVFNNVSPFIKFAHFTSNQAILEAVNHCDSIHIIDLDIMQGLQWPAFFHILATRMEGPPQVTMTCFGTSTELLVETGKQLSNFARRLGMSFKFHPIASKFGEVIDVSMLHVKPGEALAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGSFLDRFVGSLHYYSTLFDSLGAYLHFDDENRHRVEHALLSREINNVLAIGGPKRNGEDKFRQWRRELANHYFQQIPMSANSMAQAQLILNMFSPAYGYSLAQVDGTLRLGWKDTSLYTASAWTCCTSN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01745 488 Pfam GRAS domain family 127 483 IPR005202 -
Vian3g01745 488 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 80 479 IPR005202 -
Vian3g01745 488 ProSiteProfiles GRAS family profile. 118 483 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01745 Vian-Chr3 19765722 19767188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01745 122 483 GRAS Transcription Factor Family AT3G54220 55.014 1.36e-135 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian3g01745 GRAS 2.4e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01745 - - gmx:100775656 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01745 3 19765722 19767188 Vian3g01745 3 19765722 19767188 ECH