Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01743 ATGGAGCATGTGATTGGTGGCAAGTTTAAATTGGGAAGGAAAATTGGGAGCGGGTCTTTTGGGGAGCTCTATTTAGGTGTTAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAGCCTGTGAAGACCAGACATCCACAGCTTCACTATGAGTCAAAACTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAATTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTTTGGAAGATTTGTTCAATTATTGTAACCGGAAGTTCTCGTTGAAGACAGTGTTAATGCTTGCTGATCAGCTGATTAACAGAGTTGAATATATGCATTCCAGAGGTTTCCTTCACCGTGACATCAAGCCTGACAATTTCTTAATGGGTCTAGGACGGAAAGCAAATCAAGTGTATGCCATTGATTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGTACAGCACGCTATGCAAGTGTCAATACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTACGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACAAAGGTGTCTACTCCCATAGAGGTGCTTTGCAAATCCTATCCCTCTGAATTTGTATCATATTTCCACTATTGCCGTTCTTTGCGATTTGAGGACAAACCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTGTTTATTAGAGAAGGCTATCAATTTGACTACATTTTCGACTGGACTATGTTAAAGTATCCACAGATCAGTAGTAGCTCAAGAGGACGGCATGGCACTGGCAAGGCAGCTGGGCAAGCAAGTCCACATGTACAAAAGCCAGAAAAAATCTCAGTTGGGAAAGACATTCGAGAGAAATTCTCTGGTGCAGTTGAAGCATTCTCCAGGAGGAATCCTGCAGGTTCGAGTCCTCACGTTGATCACGTCAAACAGAGGAGTTTTGAGGATGTACCGGTGCAAAAGGATATGCACTATGGCCAGCACAATACTGGTCGATATGGCAGCACTTCTAGAAAAGCCATGATCACATCAAACAAGCCAGTTTCCTCAGGTGACCATACTGGCAGGCCAACCATGACTGGGAGCCGTCCATCTGGTTCTAATAGAGTTCAACCGGCATATGACACCAAACAAGCAAATTATGCACGCGGTGCTGGTGTCCGTGGCAGAGGCCACCGCGATGATCCTCTGAGAAGCTTTGAGCTCCTCAACATCAGGAAGTAA 1368 0.4408 MEHVIGGKFKLGRKIGSGSFGELYLGVNIQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGIEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISSSSRGRHGTGKAAGQASPHVQKPEKISVGKDIREKFSGAVEAFSRRNPAGSSPHVDHVKQRSFEDVPVQKDMHYGQHNTGRYGSTSRKAMITSNKPVSSGDHTGRPTMTGSRPSGSNRVQPAYDTKQANYARGAGVRGRGHRDDPLRSFELLNIRK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01743 455 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01743 455 PANTHER CASEIN KINASE-RELATED 8 344 - -
Vian3g01743 455 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01743 455 CDD STKc_CK1_delta_epsilon 8 282 - -
Vian3g01743 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vian3g01743 455 MobiDBLite consensus disorder prediction 301 322 - -
Vian3g01743 455 FunFam Casein kinase 1-like protein 1 330 - -
Vian3g01743 455 Gene3D Transferase(Phosphotransferase) domain 1 1 345 - -
Vian3g01743 455 FunFam Putative Casein kinase I 1 85 - -
Vian3g01743 455 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01743 455 MobiDBLite consensus disorder prediction 372 425 - -
Vian3g01743 455 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vian3g01743 455 MobiDBLite consensus disorder prediction 377 423 - -
Vian3g01743 455 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01743 Vian-Chr3 19737088 19743756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01743 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 2.35e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vian3g01743 Pkinase 4.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01743 K08960 K08959 gmx:100789031 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02218 2 42284283 42289693 Vian3g01743 3 19737088 19743756 PCT