Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01723 ATGGAGATGGAGAGGTACACCAGTCAGCGGTGGCGACCTACTGATGATCAGGTCAAAATGATGACCAATATCTACAACTATGGAGTCACACACCCAAGCAGAGCGCAAGTCGTCGAGATCGCGTCTCGACTAAGGACCTTCGCAGATGCCAGCGAATACAACGTGCACTGCTGGTTCAACAACCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGATCCCACTGGCACTCTCTTTTCACAACTGCCGCTATATATGTACGAATACGACTGGGTAATTATGAGGGCGCCGAGGCTGCTGGATTTGTTCCCCGTTCCGATCATCATCGACGACGACAGAGACGAACGACAAATCCCTCCACCCATGCTTCTCACATTCCGAACCAGAGCTCCCTCGATGGAGCTCTCCTTTAGACCACCACAACCAGCTCGAGAATTTTTTCATTAA 450 0.5178 MEMERYTSQRWRPTDDQVKMMTNIYNYGVTHPSRAQVVEIASRLRTFADASEYNVHCWFNNHGNRVRRWQAEIDPTGTLFSQLPLYMYEYDWVIMRAPRLLDLFPVPIIIDDDRDERQIPPPMLLTFRTRAPSMELSFRPPQPAREFFH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01723 149 Gene3D - 8 73 - -
Vian3g01723 149 CDD homeodomain 10 70 IPR001356 GO:0003677
Vian3g01723 149 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian3g01723 149 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
Vian3g01723 149 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 68 IPR044555 GO:0003700|GO:0099402
Vian3g01723 149 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01723 Vian-Chr3 19368266 19368814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01723 7 72 Wox Gene Family AT5G59340 39.394 5.93e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian3g01723 Homeodomain 3.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01723 - K13724 vum:124821070 285.419