Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01722 ATGATGAGTGAGATGGAAATCGAGAGATACACCAGTCAGCGGTGGCGTCCTACCGAAGATCAGGTCAAGATGATGACCAACATCTTCAACTACGGGGTTACCCATCCAAGCAGAGCGCAAGTCGTCGAGATCACGTCTCGACTAAGGACCTACGGAGATGCCAGCGAATACAACGTGCACTGCTGGTTCAACAACCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCCACTGGCACTCAATTTTCACAACTGCCGCTGTATATGTACGATTTTTTTTTTTTGTTGAAAGAAAATGGCTGGGTGGTAATGAGGGCACCGAGGCTGTTGGACCTCTTCCCCATTCCTATCATAATCGATCCAGAAACAGAGATTCCTCCGCCTCCGCTCGTGACTTTTCGTACCAGAGCTCCCTCAACGGAGCTCTCCCTTAGACCACCACAACCAGCTCGAGAGTTCTTTCGATTTTAA 477 0.5052 MMSEMEIERYTSQRWRPTEDQVKMMTNIFNYGVTHPSRAQVVEITSRLRTYGDASEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLYMYDFFFLLKENGWVVMRAPRLLDLFPIPIIIDPETEIPPPPLVTFRTRAPSTELSLRPPQPAREFFRF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01722 158 Pfam Homeodomain 12 72 IPR001356 GO:0003677
Vian3g01722 158 ProSiteProfiles 'Homeobox' domain profile. 8 73 IPR001356 GO:0003677
Vian3g01722 158 SUPERFAMILY Homeodomain-like 13 74 IPR009057 -
Vian3g01722 158 Gene3D - 12 77 - -
Vian3g01722 158 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 76 IPR044559 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01722 Vian-Chr3 19359531 19360066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01722 1 76 Wox Gene Family AT5G59340 39.474 2.37e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian3g01722 Homeodomain 4.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01722 - K24144 vum:124821070 238.424