Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01705 ATGGGTAACGCCCATGGACACCGCCATCGCAAACACCCCAACTCCGTTCCTCCGCCCCATATATACGATCACCCTCCACCATTCCCAACCCCACCACCACCCATAGCTAATTCCAACATGCTCTCTCTTCCTTATACCCACGTAGACACCACCCTCCGCGCCCTCGCCGCCCAAGCCGAGGGCTTCGGCCGCTTCGCTGTTGGCGGCCTCCACGGTCCCCTTCACCGCGTCACATCGCTCGCAGATGACGGACCGGGGTCGCTGCGTGAGGCGTGTCGCGGAAAAGAACCATTGTGGATTGTGTTTGAGGTGTCCGGCACCATTCATCTCTCCTCGTACCTGAACGTGTCGTCTCACAAGACCATCGATGGTCGTGGCCAGAGGATTAAACTTACCGGACATGGGTTGCGCCTGAAGGAATGCGAACACGTCATAATCTGCAATTTGGAGTTCGAAGGAGGCAAAGGGCATGATGTTGACGCCATTCAGATCAAACCTAAATCCAAACACATATGGATTGATCGTTGCACGCTCGCTGATTATGATGACGGACTTATAGACATCACACGTGAAAGCACAGACATTACTATCTCAAGGTGTCACTTCTCTCAGCATGATAAAACTATGCTTATTGGGGCTGATCCATCGCATGTTAACGATAGGTGCATGAGGGTCACTATACACCATTGTTTTTTCAATGGGACGCGACAGAGGCACCCTCGTGTTAGGTTTGCGAAAGTGCATCTCTATAATAATTATATCAGAAACTGGGGCATATATGCTGTGTGTGCTAGTGTGGAAGCCCAGATATTCTCGCAGCATAATATCTATGAAGCCAGACAGAAGAAGGTGGCCTTTAAGTACCTTACTGAGAAGGCAGCAGACAAGGAAGTGGGAACAAGTGGCTACATAAGGTCTGAGGGAGACTTGTTCTTAAATGGTGCTGAACCAGGGTTAATGACTGAGAATGGAGGATGCAACATGTTTCACCCCAGTGAACACTATCCCTCATGGACAGTGGAAGCTCCCACAGAGGATCTTAAACATATTCTTCATCACTGCACTGGATGGCAATCTGTTGCTAGACCAGCAGATCAAGCACTATGA 1107 0.5005 MGNAHGHRHRKHPNSVPPPHIYDHPPPFPTPPPPIANSNMLSLPYTHVDTTLRALAAQAEGFGRFAVGGLHGPLHRVTSLADDGPGSLREACRGKEPLWIVFEVSGTIHLSSYLNVSSHKTIDGRGQRIKLTGHGLRLKECEHVIICNLEFEGGKGHDVDAIQIKPKSKHIWIDRCTLADYDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHVNDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYIRNWGIYAVCASVEAQIFSQHNIYEARQKKVAFKYLTEKAADKEVGTSGYIRSEGDLFLNGAEPGLMTENGGCNMFHPSEHYPSWTVEAPTEDLKHILHHCTGWQSVARPADQAL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01705 368 Gene3D - 44 353 IPR012334 -
Vian3g01705 368 Pfam Pectate lyase 113 276 IPR002022 -
Vian3g01705 368 MobiDBLite consensus disorder prediction 18 35 - -
Vian3g01705 368 PANTHER PECTATE LYASE 18-RELATED 48 316 IPR045032 GO:0030570
Vian3g01705 368 MobiDBLite consensus disorder prediction 1 15 - -
Vian3g01705 368 SMART amb_all 70 283 IPR002022 -
Vian3g01705 368 SUPERFAMILY Pectin lyase-like 58 360 IPR011050 -
Vian3g01705 368 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Vian3g01705 368 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Vian3g01705 368 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Vian3g01705 368 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01705 Vian-Chr3 19125232 19128206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01705 80 368 Polysaccharide Lyase AT3G55140 76.125 5.70e-171 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01705 K01728 - gmx:100814368 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01705 3 19125232 19128206 Vian3g01705 3 19125232 19128206 ECH