Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01685 ATGGGAGAAGAAGCGGTTTGTGTGCATGCATTAGATGAAGGAAGGAAGGAAAACAATGAGGAATCAAAGACGGAACTGAAGCGTGACTACGACCAATGCGTTAGTGATACTGAACGCCACTTGTTTCCTCATAAGAAACAAGTTAAGGAAGTTTCGAACGATGAAGTGCGCTCTGAGGTTTCTAATCCCAACGTTTCTGCAGTAGAGCATGCGCTAACTTTTCAAGATATCAGTAGCCAACCAACTGAATCCACGGACGTTAACCATGCGGAATGTGGAGAACTGACGTCTACTTGTTTGGAGAATTCCAGTTCTGATGAGACCTTGAGTGATGAAGCTGGTGATCTGAATATTACTACTACTACAAATAATAATAATAACAACAACAACAATACTTCTCAGAGTGACAAGAACACGAGTAGTGCTGCAATGACATCCTGTGTTGTGATGGAAATTCCCAAGCATGCTAGTTCCTCTGGGATCAGGAAGATTACTTTTAAGTTTAGTAAAAAGAAAGAGGACTATGGTTACCAGCCACCTGCTCCTGTGCACCGTTACACTGATGGCAGTCACATTGGTTTTCATGCGGTTGATGAATATTTGGCAAGGGATTATTGTAGTGGTGGGTTGGTAGAAAGCATGGGATATGCTCACGATGGAGATTTGGAGTCGTACGCTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTTCCCAACTGTTACCCTACAAATGTCAAAAAGCTTTTATCAACTGGCATCCTTGACGGAGCTGTAGTGAAGTATATTTATAATCCTGGAAAGGTTGAGCTACAGGGGATTATTGATGCTGGTGGATATTTGTGTGGCTGCTCAATGTGCAATTACTCTAGAATTCTTAGTGCCTATGAGTTTGAGCAGCATGCCGGGGCCAAGACTAGACATCCAAATAATCATATTTTCTTAGAAAATGGAAGACCAATATATAGTATTATACAGGAAATAAAAACGGCTCCACTCAGTATATTAGACGAGGTTATCAAGAATGTGGCTGGTTCCTCTGTCAATGAGGAGTCTTTCCAGGTTTGGAAAGAAAGTCTTCTACACAGCAACGGCAAGGTTCAGGCTTATAAAAATTCTAGCGCCAAACTTGTTGGCATGTCTCATACAAAACTAAGTCAATCCGTAGATAGTACTAGCCACTTGTCGTCTTTGCATGTGCCAAGTCATTATGAGCAGCTCAAGTATATGAATCAGACAAATGACGAATGGAAACGTGTGATGAAAAAGTCAAGCTCCTATTCTTCTAATTCTGGTGTACTGCTGAAAAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAATGATTTGCACAGGTTACTTTTTATGCCAAATGGGCTACCAGATGGTGCTGAGTTGGCTTATTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAGCGGTATAGTCTGTGGTTGTTGTGATATTGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGGCGTCAACCTTATCGGCACATATATACTTCCAATGGGTTAACACTTCATGATATAGCTCTCTCATTGGCAAATGGTCAAAACCTTACCACGGGAGACAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGTAATGGATGCCCTAGGGCCTTTCATACAGCCTGCTTGGGTTTACAGTGTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGCGGAGATAGTGCTGGTAATGGAAGAGAATCTTCTCTTGTGAGGCCAATCATGATCCGGTTGACACGAGTTGATAAAACACCAGATTTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCAAAATTTGATGAGCGAACGGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGCAGTGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGACAATATACCAGCTTCCTTGTCAGAACTAATAATCAGGAAGCACGAGGAGAAGGGACTATGTACCTATGGTTCCACAGATGATATTCAGTGGAGAATTTTAAGCGGAAAAAGCCGTTATCCGGAACATTTACCGCTGCTTTCAAGAGCTGCTGCAATTTTCCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGCCGTGATCTGATTCCGGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTTGGGGGGATGTATTGCATTGTTTTAATAGTGAATTCTGTTGTAGTATCAGCTGGGCTTCTGAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCACTCGTTGCTACTAGCAGAGTACATCAAGGAAAAGGATATTTCCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAACGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGACGCAGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGTGAAGATCAGTTATCCAAACATCTCAGAGAGGTGCAGCTAACTCTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTTCAGCAGACTATAGAATGA 2670 0.4232 MGEEAVCVHALDEGRKENNEESKTELKRDYDQCVSDTERHLFPHKKQVKEVSNDEVRSEVSNPNVSAVEHALTFQDISSQPTESTDVNHAECGELTSTCLENSSSDETLSDEAGDLNITTTTNNNNNNNNNTSQSDKNTSSAAMTSCVVMEIPKHASSSGIRKITFKFSKKKEDYGYQPPAPVHRYTDGSHIGFHAVDEYLARDYCSGGLVESMGYAHDGDLESYARNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELQGIIDAGGYLCGCSMCNYSRILSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFQVWKESLLHSNGKVQAYKNSSAKLVGMSHTKLSQSVDSTSHLSSLHVPSHYEQLKYMNQTNDEWKRVMKKSSSYSSNSGVLLKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGSGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHTACLGLQCVPDSGWQCLNCGDSAGNGRESSLVRPIMIRLTRVDKTPDFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCSDCNRIYVALQNSVSAGADNIPASLSELIIRKHEEKGLCTYGSTDDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNVAELPLVATSRVHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKHLREVQLTLFNKTSMLEKTVQQTIE 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01685 889 ProSitePatterns Zinc finger PHD-type signature. 545 584 IPR019786 -
Vian3g01685 889 SUPERFAMILY FYVE/PHD zinc finger 614 671 IPR011011 -
Vian3g01685 889 MobiDBLite consensus disorder prediction 101 142 - -
Vian3g01685 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 532 610 IPR013083 -
Vian3g01685 889 MobiDBLite consensus disorder prediction 1 29 - -
Vian3g01685 889 ProSitePatterns Zinc finger PHD-type signature. 618 673 IPR019786 -
Vian3g01685 889 PANTHER AUTOIMMUNE REGULATOR 16 883 - -
Vian3g01685 889 FunFam PHD zinc finger protein 616 676 - -
Vian3g01685 889 ProSiteProfiles Zinc finger PHD-type profile. 542 587 IPR019787 -
Vian3g01685 889 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 532 610 - -
Vian3g01685 889 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 768 860 IPR016181 -
Vian3g01685 889 SUPERFAMILY FYVE/PHD zinc finger 540 584 IPR011011 -
Vian3g01685 889 Gene3D - 715 884 - -
Vian3g01685 889 SMART PHD_3 544 585 IPR001965 -
Vian3g01685 889 SMART PHD_3 617 674 IPR001965 -
Vian3g01685 889 Pfam Tify domain binding domain 478 527 IPR032308 -
Vian3g01685 889 Pfam Tify domain binding domain 273 327 IPR032308 -
Vian3g01685 889 FunFam PHD zinc finger protein 765 872 - -
Vian3g01685 889 CDD PHD1_AIRE 544 584 - -
Vian3g01685 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 676 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01685 Vian-Chr3 18826347 18835343 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01685 1 884 PHD Transcription Factor Family AT3G53680 52.836 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01685 - - gmx:100808999 1586.62