Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01679 ATGGCGGCGGCGTCGCGGCGGCTGCGGGACCTCCAATCACAGACGGCGAACAAGATCTGCGTTGACTGCACCCAGAAGAACCCGCAGTGGGCCTCCGTCTCGTACGGCGTCTTCATGTGTTTGGAGTGCTCCGGCAAGCACCGTGGCTTGGGCGTTCACATCTCCTTCGTCCGATCTGTCACCATGGACTCCTGGTCCGAAGTCCAGATCAAGAAAATGGAAGCTGGCGGCAACGATAAGCTCAACGCCTTCCTCGCTCAGTACTCCATCCCCAAGGAGACAGACATCGTTACTAAATACAACACCAACGCCGCCGCCGTCTACCGCGATCGGATCCAGGCCATCGCCGACGGTCGTCCCTGGCGCGATCCGCCGGTAGTGAAGGAAAACCTCGCAGCAGGCAAGGGGAAGCCGCCGCTGACGCAGACGCAGACGCGAAGAGCTAATGAGGGAGGATGGGACGATTGGGACAACGGGGGGAGTTCGGCGGACATCCGGAGCAGGTCAACTGGGGACTTCAGGAGCTTGAACGGCGCGGGTGTGCCGGCGAGGTCTAGGTCGACGGAGGACATCACGCGGTCGCAGCTTGAGGCCTCGGCGGCGAACAAGGAAAGCTTCTTCGCGAGGAAGATGGCGGAGAACGATTCGCGGCCCGAGGGGCTTCCGCCGTCGCAGGGAGGGAAGTACGTAGGGTTCGGGTCCAGTCCGCCGCCTCAGCGGAGGAACGATGCTCAAAACGATTATTTATCTGTCGTTTCGCAGGGTATTGGGAAATTATCTTTGGTTGCTGCCTCTGCTGCTCAGTCTGCGGCTAATGTTGTTCAGGCGGGCACGAAGGAGATCACTTCAAAGGTCAAGGAAGGTGGTTATGATCACAAGGTTAATGAAACTGTCACTGTTGTCACTCAGAAGACATCAGAGATTGGACAGAGGACTTGGGGCATAATGAAAGGAGTTATGGCCATTGCCTCCCAGAAGATCGAGGAGTACACTAAAGATGATACGAACTGGAAGACTGATAACTGGCAACGAAATGAGAGTGATAGAAATGGTTATTATCAGGATTTTAACCAACAGAACAAAGGCTCGAATTCTGCTCCTGGAAGAGAACAATCTTCATCAGGGCAATATAAAACTTATAGCTCAAGCTCTTTGGATGATTGGGATCACCAAGGTAGCAGGAAGCAAGAACCAGCTAAAGGATCAACTCCCTATTCATCAGGTGGGCAGTCTAGCACCTACAACTCAAGCTCTTGGGATGATTGGGAACAAACAGATTCTAGGAAGCAAGAACCAGCTAAAGGATCAGCTCCTCATAATAATGATGATTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTTGATAGTTTGTACCAAGGTGCGTCTAATAAGAAAGGTCTTGGTCATAATGGAAAATCAGATGGCACTTGGACAGAGGGAGGCTTTCTCTAA 1455 0.5306 MAAASRRLRDLQSQTANKICVDCTQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEVQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAAAVYRDRIQAIADGRPWRDPPVVKENLAAGKGKPPLTQTQTRRANEGGWDDWDNGGSSADIRSRSTGDFRSLNGAGVPARSRSTEDITRSQLEASAANKESFFARKMAENDSRPEGLPPSQGGKYVGFGSSPPPQRRNDAQNDYLSVVSQGIGKLSLVAASAAQSAANVVQAGTKEITSKVKEGGYDHKVNETVTVVTQKTSEIGQRTWGIMKGVMAIASQKIEEYTKDDTNWKTDNWQRNESDRNGYYQDFNQQNKGSNSAPGREQSSSGQYKTYSSSSLDDWDHQGSRKQEPAKGSTPYSSGGQSSTYNSSSWDDWEQTDSRKQEPAKGSAPHNNDDWAGWDNAKDDGFDSLYQGASNKKGLGHNGKSDGTWTEGGFL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01679 484 CDD ArfGap_ArfGap1 4 118 - -
Vian3g01679 484 MobiDBLite consensus disorder prediction 129 199 - -
Vian3g01679 484 Pfam Putative GTPase activating protein for Arf 6 106 IPR001164 GO:0005096
Vian3g01679 484 MobiDBLite consensus disorder prediction 212 244 - -
Vian3g01679 484 SMART arf_gap_3 5 121 IPR001164 GO:0005096
Vian3g01679 484 SUPERFAMILY ArfGap/RecO-like zinc finger 6 112 IPR037278 -
Vian3g01679 484 MobiDBLite consensus disorder prediction 397 421 - -
Vian3g01679 484 FunFam ADP-ribosylation factor GTPase-activating protein 1 130 - -
Vian3g01679 484 MobiDBLite consensus disorder prediction 337 484 - -
Vian3g01679 484 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 111 IPR001164 GO:0005096
Vian3g01679 484 MobiDBLite consensus disorder prediction 346 387 - -
Vian3g01679 484 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Vian3g01679 484 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Vian3g01679 484 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Vian3g01679 484 MobiDBLite consensus disorder prediction 422 436 - -
Vian3g01679 484 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Vian3g01679 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 402 IPR044519 GO:0005096|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01679 Vian-Chr3 18770394 18773487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01679 6 92 C2H2 Transcription Factor Family AT4G21160 48.864 3.10e-22 95.9