Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01663 ATGGGTCTTAGAGACATTGGTGCTTCACTGCCCCCAGGGTTTCGCTTTTATCCCAGTGATGAGGAGTTGGTCCTTCATTACCTCTACAAAAAGGTCACAAATGAGGAAATTCTAAAGGGTACCCTCATGGAAATCGACTTGCATACATGCGAGCCATGGCAACTTCCAGAGGTGGCTAAGCTTAACGCAAACGAATGGTACTTCTTCAGCTTTCGTGACCGCAAATATGCAACCGGCTACCGAACGAATCGTGCAACGACATCTGGCTATTGGAAAGCCACGGGAAAGGATCGTACGGTTTTTGACCCCTCCACGCGTGAGGTTGTAGGGATGAGGAAGACTTTGGTGTTCTACAGGAACAGGGCCCCGAATGGCATCAAAACGGGTTGGATCATGCACGAGTTTCGCTTGGAGACGCCACATATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAAGGAAAAGCAGACAACGTTAACAGTGCCAAACTCATGTATGAGAACACAGTTCCATCCCTAACTCTGGCTTCGTCATCTCCAACCAACCAAACCATTGGGTATAACCAACTTCCCCATTTCTCTTCCTCAATCACACCCCATCATAATCATTACCATCATCATCATCATCATCAAAATCAAACCCAAAACAACAACAACTCCTTCATGGGTGTCCTTCACTTTTCTAGGGAAACAAATGCAAACTCTAGCACCATCACTCAGATAAGTCCCAAATGTGATGATGGCTATGGCTTTCTATGGGACATGGAGATCGAAGAAAATAGCTTCCATGATGCCGTGGCCTCCAACATGGTCGACGGAATGAGATTCGAGGTTGATAATAATAGTGTGGTCTTGTTATGA 870 0.4621 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKVTNEEILKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVFDPSTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKADNVNSAKLMYENTVPSLTLASSSPTNQTIGYNQLPHFSSSITPHHNHYHHHHHHQNQTQNNNNSFMGVLHFSRETNANSSTITQISPKCDDGYGFLWDMEIEENSFHDAVASNMVDGMRFEVDNNSVVLL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01663 289 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Vian3g01663 289 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vian3g01663 289 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 228 - -
Vian3g01663 289 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vian3g01663 289 MobiDBLite consensus disorder prediction 203 222 - -
Vian3g01663 289 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01663 Vian-Chr3 18556635 18560438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01663 6 221 NAC Transcription Factor Family AT1G56010 47.458 5.01e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian3g01663 NAM 6.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01663 - - gmx:100783645 479.944