Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01661 ATGCATATAGGTCAGACAGATACAACTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCATGTCAAACAATGAAACCTATGCCCTTTCAGAAGATCTGTAATAATATGGTTGGGGTGTTAAAGCGTTTGAAGCCGGTGCTTGATGACGTTATGGATCACCAAATTCCATCAGATGTAAATCTATGTAAAGAGTGTGAGGAATTGGATAAGCGAGTTAATGAAGCTAGAGATTTCATTGAAAAATGGAGTCCAAAGATGAGCAGGATTCACAGTGTTCTACAAGGTGGTACATTGTTGATCAAGTTACAAAGCACTTCACTAGATATCTGTCACATGATAGTTAGATCCTTACAGTCACCTCCATCTGTATCAGTTTTGGCTAATCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAATTGCAATGGTCCATATAGAAGAAGCACTGAGAAACCAAAGAGACAATATTGAACCATGCAAGGAGCATCTGACGGAAATTATCGAGTTACTTAAATTGAAACCAAATCAGGAGCTCTTAAAAGAAAGCATTGCTGTGGAAAAGGAAAGGTTGAACACTGAAGCCAATAAAATGATAGCGGACATAGAAGAAATTAATGAAATTGTGAATCTTGTCCGTAGTTTGCGCGATTATATGATCAAAACTGAGTGCCCTGTAGTCAAGAGTGGTCTCTCAATCCCTCCATACTTCCTCTGTCCTTTATCGTTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACAGTTTGTCCCAAAACTCGTCAGAGACTTACTCATACAAATCTCATTCCTAATTACACTGTCAAAGCCATGATAGCAACTTGGTGTGAGGAAAATGATGTTAAACTTTCTGGTATCTCTGACCACAAAAAATCTGCCTGTGTCACATCCTCCATGGATAATTTATTGCCTCAAGATTTAACTCATGATTGCCGTGTTGGGTCTCTCTCTAGTAGCAATTCCATTTCAAGATCATCTCTTCAAACTGAAAATGCATTTGAAAAGCAAAAGGCTGATAACTCTTTTAGATTATGTGGAGAATACAATGGATGCCAGAGTGGAGCAGCTGAAAGGTGTGAGCAAGAGTCCCCATATACTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTACTGATTGTGCAGTTTCAAAAGAGGTGTCAGGGATATCCAATAGGCATCAAAATGTGAAGGTGCTCTCTGGAGAAATCACAAACACGTGTCCTTCTCCTGGTAACAAACAATCAGGGATATCTCCTTGGTTATCTGGAAAAACATTTCAAAACCCTGGATCAAATGTGGGATTGTTGGAGAATGGAAATCATAATGATAATAATAATAGTGATAGTCTGTCAAGATATGATTCACATTCTGTTTCAAACTCCGGGTCAGATGAATTGACCACCACATCTCATGTCATTAGATTGATTGAAGACCTTCACAGTCAATCAGTTGAAACAAAGACTACTGCTGCTGAAGAATTGAGGCTCCTTACAAAGCATAACCAGGAAAACCGTGTCATTGTAGGGCAGTGTGGGGCTGCCATGCCTTTGCTTTCATTGCTACATTCAGACGTGAAGGTAACACAAGAGCATGCTGTGACAGCTCTACTAAACTTGTCAATTAATGAAGAGAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAGCCTCTTATCCATGTTTTGAAGACAGGAAATGATAATGCCAAGGCGAATTCTGCAGCAACACTATTCAGCCTCTCAGTACTTGAGAACAATAAGGCAAGAATTGGCCGTTCCAGGGCTGTTAAAGCTTTGGTTGATCTTCTTGCCTCAGGGACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTTTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCAGTGAAATTTCTGGTTCGGTTATTAGATGATGCTGGTGGAATGGTTGACAAGTGTGTTGCTCTTCTGTCAAACCTGTCAACCATTCCAGAGGGCCGATTAGAAATTGCAAGGGAAAGGGGTATCCCCTTACTTGTTGAAGTTGTTGAGTCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAAATATGCCTTCATAGTACTAAGTTCTGTAATCTGGTTTTGCAAGAAGGCGCTGTCCCTCCCCTAGTTGCATTGTCAGTATCTGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGCCATTTTCGCAATCAGCGGGAAATAGCTGCTTCTGGGAAGGGAAAATCATGA 2379 0.4082 MHIGQTDTTSVKCLINSISRFIHLVSCQTMKPMPFQKICNNMVGVLKRLKPVLDDVMDHQIPSDVNLCKECEELDKRVNEARDFIEKWSPKMSRIHSVLQGGTLLIKLQSTSLDICHMIVRSLQSPPSVSVLANLQHYIQELQCLKKEIAMVHIEEALRNQRDNIEPCKEHLTEIIELLKLKPNQELLKESIAVEKERLNTEANKMIADIEEINEIVNLVRSLRDYMIKTECPVVKSGLSIPPYFLCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENDVKLSGISDHKKSACVTSSMDNLLPQDLTHDCRVGSLSSSNSISRSSLQTENAFEKQKADNSFRLCGEYNGCQSGAAERCEQESPYTHSRSESFSSSISSTDCAVSKEVSGISNRHQNVKVLSGEITNTCPSPGNKQSGISPWLSGKTFQNPGSNVGLLENGNHNDNNNSDSLSRYDSHSVSNSGSDELTTTSHVIRLIEDLHSQSVETKTTAAEELRLLTKHNQENRVIVGQCGAAMPLLSLLHSDVKVTQEHAVTALLNLSINEENKALIMEAGAIEPLIHVLKTGNDNAKANSAATLFSLSVLENNKARIGRSRAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLLDDAGGMVDKCVALLSNLSTIPEGRLEIARERGIPLLVEVVESGSQRGKENAASILLQICLHSTKFCNLVLQEGAVPPLVALSVSGTPRAKEKAQQLLSHFRNQREIAASGKGKS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01661 792 FunFam RING-type E3 ubiquitin transferase 238 314 - -
Vian3g01661 792 FunFam RING-type E3 ubiquitin transferase 489 784 - -
Vian3g01661 792 PANTHER U BOX DOMAIN-CONTAINING 34 779 - -
Vian3g01661 792 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Vian3g01661 792 MobiDBLite consensus disorder prediction 436 499 - -
Vian3g01661 792 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 546 588 IPR000225 GO:0005515
Vian3g01661 792 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 669 710 IPR000225 GO:0005515
Vian3g01661 792 SUPERFAMILY ARM repeat 508 778 IPR016024 -
Vian3g01661 792 SMART arm_5 658 697 IPR000225 GO:0005515
Vian3g01661 792 SMART arm_5 617 657 IPR000225 GO:0005515
Vian3g01661 792 SMART arm_5 576 616 IPR000225 GO:0005515
Vian3g01661 792 SMART arm_5 698 738 IPR000225 GO:0005515
Vian3g01661 792 SMART arm_5 535 575 IPR000225 GO:0005515
Vian3g01661 792 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 628 670 IPR000225 GO:0005515
Vian3g01661 792 Gene3D - 581 684 IPR011989 -
Vian3g01661 792 Gene3D - 469 580 IPR011989 -
Vian3g01661 792 Coils Coil 196 216 - -
Vian3g01661 792 SUPERFAMILY RING/U-box 240 315 - -
Vian3g01661 792 CDD RING-Ubox_PUB 242 294 IPR045210 -
Vian3g01661 792 Gene3D - 685 787 IPR011989 -
Vian3g01661 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Vian3g01661 792 Pfam Armadillo/beta-catenin-like repeat 620 656 IPR000225 GO:0005515
Vian3g01661 792 Pfam Armadillo/beta-catenin-like repeat 576 615 IPR000225 GO:0005515
Vian3g01661 792 Pfam Armadillo/beta-catenin-like repeat 535 574 IPR000225 GO:0005515
Vian3g01661 792 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Vian3g01661 792 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01661 Vian-Chr3 18503042 18507573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01661 7 792 U-box Gene Family AT3G54790 54.899 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01661 - - gmx:100800949 1311.21