Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01658 ATGCCGTCGCTCCTCTCTCCGGGGAGAATCCACTGTCTGGAGGTGGAGAATTTCAAGTCCTACAAGGGGTTCCAAATTATCGGCCCCTTCTACGACTTCACCGCCATCATCGGTCCCAACGGCGCCGGTAAGTCCAACCTCATGGACGCCATCAGCTTCGTCCTTGGCGTCCGCACCGGCCAGCTCCGCGGCGCGCAGCTCAAGGACCTCATCTACGCCTTCGACGACCGCGAGAAAGACCAGAAGGGTCGCCGAGCCTTCGTCCGCCTTGTCTACCACCTCGCCAACTCCACTGAGATTAGATTCACCCGCACCATCACCAGCGCCGGCTCCAGCGAGTACCGCATCGACGACACCCTCGTCAATTGGGACGCCTACAACAACAGACTCAAGTCCCTCGGCATCCTCATCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTTGAGTCCATTGCGTCGAAGAATCCCAAAGAGCTCACTGCACTGGTGGAGCAGATATCTGGCTCTGATGAGTGCAAGAGGGACTATGAGCAGTTTGAAGAGGAAAAAGGCACTGCTGAAGAAAAATCAGCACTTGTTTATCAGAAGAAGAAGACTGTTGTTATGGAAAGAAAGCAGAAGAAAGAACAAAAGGAAGAAGCAGAGAAGCATCTCCGCCTGCAACAAGAACTGGTAGTGGATCTGTCTCAATATCCAAAGGCTATTGACAATGAATTGAAGAAATCTATGAAGAGAGAACATTTCTTGTGGCAGTTGTTTAATATACATAATGATTATGTTAAAACAATTAAGGATCTTGAAGATGAGGAGAGAAGTCGTGAAGGTGTTGTTAAAGAGCTGGAAAATTTTGAAAATGAAGCTAGTAAAAAGAAAAAAGAGCAGGCCAAATATCTCAAAGAGATTACAATGCGGGAAAAGAGAATTAATGAGAAAAACAGCAAACTTGATAAGAGTGTTGATTCTATGCTTTACTCATTGAACTTTGTTGCTTGCGGTCATATGTATTTTGAAGAAAACTGGGATGGAAATTGCAATTTTAAGCAGCCCGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATTACATCAAAAATTAAAAAAGGGAAGAAAGAACTTGATAAAAAAAAGGTTGAACGGATGAAGCATGATGCTGATATTGCATTACTACAGAATGGCATCCAGGATCTTACAGCAAAAATGGCAGACCTTCAGGAAAAGGGACGGGATGTTGATCATGAGCTTGATTTGCAAGGCAATGATTTGGATGAGTATTTTCGAATCAAAGAGGAGGCTGGGATGAAAACTGCAAAGCTTAGAGAAGAAAAGGAGCTTCTAGATAGGAAACTAAATGCTGATAGCGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAATCTGAACTGAATTCACAGGAAGAACAGATGCGAGCAAGGGGTGAAAAGATTCGTGATAATTCTGCAAAAACTAAAGCTGGCCTTGATAACCTGAAAAAGGAACTACGTGTGATGCAGGACAAACTTCGTGATTCCAAGAAAAAATATGAAAATTTGAGGTTAAAAATTGGTGAAGTAGAAAATCAACTTCGTGAATTGAGGGCTGATAGATATGAAAGTGAGAGAGATGTTAGGTTGTCTCAGGCTGTTGAGACTCTGAAGCGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTTGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGACAAGGAGTCAACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGTACAGCAAAACTGGTCTTTGATGTGATTCAATATCCTTTTTCTCTATTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAACACTCTTGTTTGTGATGATCTGGAAGAGGCCAAAATTTTAAGCTGGAGTGGAGAGAGGTTTAAAGTTGTAACTGTTGATGGAATTCTGCTCACAAAATCCGGCACAATGACTGGAGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAATATGAAGCAGAGTTGGAATCACTAGGATCAATAAGGGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCCGAAATTGAGAAGGGAAGCATTGAAGATAAACTTTCAAATCTGGGCCACGAAAAGAAGACAATCAAAGAAAGAATTGAATGTATCAGTCCAGAGCTGAAGAAGTTAAACGATGCTGTTAACAAGAGCAATGCAGAAATACGAAAGCTTGAGAGGCGCATAAATGAAATTACTGATAGGATATACAGAGACTTCAGCAAGTCAGTTGGGGTAGCAAACATCCGTGAATATGAAGAAAATAGACTCAAGGCCGCTCAAAATATAGCGGAAGAGAGGCTGAACTTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTAGAATATGAGCAAAATCGGGACATGAGTTCAAGAATTCTAGAATTGGAAGCTTCTCTAAGTGCTTTAGAGAAAGATTTAAAACGTGTACAGGACAGAGAGGCTGCAGCGAAGGTAGCAGCTGAGAAGTCTGCTGAAGAGGTTAATCAGTTAAAGGAAGAAGTTAAAGAGTGGAAATCAAAGTCAGAAGAATGTGAGAAGGAAATCCAAGAGTGGAAGAAGAAAGCTTCTGCAGCCACAACAAACATATCCAAACTTATTCGCCTGATAAATTCCAAGAAGGCACAGATTGGTCAGTTGGATGTGCAAAAGCAGGAAATATTAGATAAGTGTGAACTTGAACAGATTAACCTCCCTATCATATCAGATCCCATGGATACTGATAACTCGGTACCAGGCCCACATTTTGATTTTGATCAACTAAGTAGGGCACTGAAAGATAAGAGGCACTCAGACAGGGATAAAATTGAGGGAGACTTTAAGCAAAAAATTGATGCCTTGGTAGCTGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAGGCTCTGTTGGAAAAGGAAAGAGCTGTAACTGAGGAGTTTGAAGCTGTCAGGAAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGGTACCAATTGTTCATGGATGCTTTTAACCATATATCTGGTAATATAGATAAAATCTACAAACAACTTACAAAGAGCAATACACATCCACTGGGGGGAACAGCATATCTAAACTTGGAAAATGATGATGATCCATTTCTCCATGGCATCAAGTACACTGCTATGCCCCCAACGAAGCGTTTCCGTGATATGGAGCAACTATCTGGTGGGGAAAAGACAGTTGCAGCACTTGCATTGTTATTCTCCATCCACAGTTACAAGCCTTCACCTTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGACAACTTGAATGTTGCCAAGGTTGCTGGCTTTATTCGTTCAAAATCATGCGAAGGGGCAAGGACTAGCCAGGATGCAGATGGTGGAAATGGTTTTCAGAGTATTGTGATATCACTGAAAGACACTTTTTATGACAAAGCTGAGGCGCTAGTTGGTGTTTACAGAGATTCTGAAAGAGGTTGTTCGAGAACCCTCACATTTGATCTGACCAAATACCGGGAGTCTTAA 3804 0.4185 MPSLLSPGRIHCLEVENFKSYKGFQIIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKDQKGRRAFVRLVYHLANSTEIRFTRTITSAGSSEYRIDDTLVNWDAYNNRLKSLGILIKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQFEEEKGTAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQQELVVDLSQYPKAIDNELKKSMKREHFLWQLFNIHNDYVKTIKDLEDEERSREGVVKELENFENEASKKKKEQAKYLKEITMREKRINEKNSKLDKSVDSMLYSLNFVACGHMYFEENWDGNCNFKQPELLKLKEEMTRITSKIKKGKKELDKKKVERMKHDADIALLQNGIQDLTAKMADLQEKGRDVDHELDLQGNDLDEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQQLRNRESELNSQEEQMRARGEKIRDNSAKTKAGLDNLKKELRVMQDKLRDSKKKYENLRLKIGEVENQLRELRADRYESERDVRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVDKESTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLGGTAKLVFDVIQYPFSLFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYEAELESLGSIRDMHLKESEASGKISGLEKKIQYAEIEKGSIEDKLSNLGHEKKTIKERIECISPELKKLNDAVNKSNAEIRKLERRINEITDRIYRDFSKSVGVANIREYEENRLKAAQNIAEERLNLSSQLSKLKYQLEYEQNRDMSSRILELEASLSALEKDLKRVQDREAAAKVAAEKSAEEVNQLKEEVKEWKSKSEECEKEIQEWKKKASAATTNISKLIRLINSKKAQIGQLDVQKQEILDKCELEQINLPIISDPMDTDNSVPGPHFDFDQLSRALKDKRHSDRDKIEGDFKQKIDALVAEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEREKTQRFNEVKQRRYQLFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARTSQDADGGNGFQSIVISLKDTFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01658 1267 Gene3D - 623 710 - -
Vian3g01658 1267 Coils Coil 170 190 - -
Vian3g01658 1267 PIRSF SMC 8 323 IPR024704 GO:0005524|GO:0016887
Vian3g01658 1267 PIRSF SMC 339 1264 IPR024704 GO:0005524|GO:0016887
Vian3g01658 1267 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1267 - -
Vian3g01658 1267 Coils Coil 198 225 - -
Vian3g01658 1267 Gene3D - 8 231 IPR027417 -
Vian3g01658 1267 Gene3D - 895 1266 IPR027417 -
Vian3g01658 1267 SMART SMC_hinge_2 562 683 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vian3g01658 1267 Coils Coil 499 547 - -
Vian3g01658 1267 Coils Coil 267 301 - -
Vian3g01658 1267 MobiDBLite consensus disorder prediction 467 487 - -
Vian3g01658 1267 Gene3D - 543 622 - -
Vian3g01658 1267 SUPERFAMILY Smc hinge domain 526 732 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vian3g01658 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1248 IPR027417 -
Vian3g01658 1267 Coils Coil 1057 1077 - -
Vian3g01658 1267 Pfam SMC proteins Flexible Hinge Domain 562 682 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vian3g01658 1267 Coils Coil 352 372 - -
Vian3g01658 1267 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Vian3g01658 1267 Coils Coil 725 745 - -
Vian3g01658 1267 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Vian3g01658 1267 Coils Coil 879 955 - -
Vian3g01658 1267 Coils Coil 443 484 - -
Vian3g01658 1267 Coils Coil 842 862 - -
Vian3g01658 1267 CDD ABC_SMC1_euk 1146 1261 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Vian3g01658 1267 Coils Coil 387 414 - -
Vian3g01658 1267 Coils Coil 801 828 - -
Vian3g01658 1267 Pfam RecF/RecN/SMC N terminal domain 10 1248 IPR003395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01658 Vian-Chr3 18397076 18414073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01658 8 114 Structural Maintenance of Chromosomes family AT5G61460 34.211 1.73e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01658 K06636 - gmx:100785315 2088.92