Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01654 ATGGGAAGAAGTCCTTGCTGTGAGAGATTGGGATTGAACAAAGGGTTTTGGAGTCCTGAGGAAGATCGCATTCTCATCGATCATATCAACACACATGGTCACAAAAATTGGCATGCCCTACCCAGACAAGCTGGGCTTTTGAGGTGTGGGAAGAGTTGCAGACTCAGGTGGATAAATTATCTTAGGCCAGATATTAAACGAGGCAATTTTACAAATGAAGAAGAAGACATGATAATCCAGTTGCATGAAAACCTGGGGAATAGATGGTCAGCCATAGCAGGAAAGTTACCAGGTCGAACAGACAACGAAATAAAGAACCTATGGAACACCCACTTGAAGAAGAGGTTGTCCCACCAAGACAAAGACACGAATCAAAACGAGTCCTTGGTCCGCACACAAATTTCCAAACAACAACAACAACAACCCGTGAATGCTCTTCCCACAGATCATGTCATCGGAACCACAGACGAAAAAAAGGCACTGTCATCTCCACAGTGGGCAAGCAGTGACGTGTCAACCCTCACCACTTCTACCACCAGTGACAGCAGAGACCACAGTGCTACTGCTATTGATCATCAACACCGCTTGCCCGTGAAGCCTGAATCGCTCGATGATGATTTCTGGTCTCAAGTTCTCTCACCTGGTAAGTCCGGCGACACCGCCAGTTTTCCGGCCACCGGCGCGGGTCACCGGGACTTCCAATGTTCACTCTCTCCGTTGTTGACTTCCAAAGGGGTGCATGCGTCAAGTGCGTACGATAATGTCAACTTTTGCAATAAGGTGAAACTGAAACTCCAAGCCATATGGAGAGAAAGACAGCCTTACATATGCAATCAGACAAGAGCCCCATTACCTACCATATTTGACATAGATAAGGAAGAGGGTCATTCCTCCATGGAGAACAGCGGCAACAATGGAGACGCAATGGCAGAATAA 936 0.4701 MGRSPCCERLGLNKGFWSPEEDRILIDHINTHGHKNWHALPRQAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEDMIIQLHENLGNRWSAIAGKLPGRTDNEIKNLWNTHLKKRLSHQDKDTNQNESLVRTQISKQQQQQPVNALPTDHVIGTTDEKKALSSPQWASSDVSTLTTSTTSDSRDHSATAIDHQHRLPVKPESLDDDFWSQVLSPGKSGDTASFPATGAGHRDFQCSLSPLLTSKGVHASSAYDNVNFCNKVKLKLQAIWRERQPYICNQTRAPLPTIFDIDKEEGHSSMENSGNNGDAMAE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01654 311 Gene3D - 69 144 - -
Vian3g01654 311 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Vian3g01654 311 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vian3g01654 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian3g01654 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 213 - -
Vian3g01654 311 CDD SANT 69 112 IPR001005 -
Vian3g01654 311 MobiDBLite consensus disorder prediction 158 184 - -
Vian3g01654 311 Gene3D - 14 66 - -
Vian3g01654 311 SMART sant 66 114 IPR001005 -
Vian3g01654 311 SMART sant 13 63 IPR001005 -
Vian3g01654 311 MobiDBLite consensus disorder prediction 126 148 - -
Vian3g01654 311 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vian3g01654 311 CDD SANT 17 61 IPR001005 -
Vian3g01654 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian3g01654 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian3g01654 311 MobiDBLite consensus disorder prediction 292 311 - -
Vian3g01654 311 FunFam MYB-related transcription factor 13 66 - -
Vian3g01654 311 MobiDBLite consensus disorder prediction 115 193 - -
Vian3g01654 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01654 Vian-Chr3 18369188 18373005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01654 1 212 MYB Transcription Factor Family AT1G06180 54.167 7.45e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g01654 Myb_DNA-binding 3.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01654 K09422 - gmx:106794951 278.1