Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01650 ATGGATTTTGATTCATCTATGTTCCAGTACGAAAGCCTTAACAGTCCCTTTGTAAATTCTTCTGTGTGTGCAGAAACATTCCATTGGGAGGAGTTTTTTCTCTTCAATGAAGAAAACAACACCAATATTCCCTTCAGCTTCAATGAGCAGTCACAGATGAAGGAATCATCCTCATCAGATTCCAACTCTTCAGGGTGTTTGGTAAGCAGTGAGTCACAGGTGGAAGTGTCCTCCAATCTAAGTGATGCAAGTGAAGGACATGTGGTGAAAGAAGCACAAGGTCCTAAGGAGAAGAGACCCTTTAGGGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCTGCTGAGATAAGAGATTCCACAAGAAATGGTGTTAGAGTGTGGATAGGCACATTTGACACAGCAGAAGCTGCAGCACTGGCCTATGACCAAGCAGCTTTCTCCACAAGAGGTTCCATGGCAGTGCTCAACTTTCCAGAAGAAGTTGTGAGAGAATCACTGAAAGACATGCCCAACAAGCCATGGGAAGATGGTTCCTCACCAGTGTTGGCACTCAAGAAGAAACACACCATGAGAAGAAAATCCAAAGCCACAAACAAAAAGCCCAAAAGGGACCATCACCATGGAAATGTGCTTTCACAGAATGTCTTGGTGCTCGAGGATTTGGGCTCTGACTACTTGGAACAGCTTCTCAGCTTAACTTCTTCTTCTTCTTCTTCTGATCATGTCTTTTTCTAG 735 0.4449 MDFDSSMFQYESLNSPFVNSSVCAETFHWEEFFLFNEENNTNIPFSFNEQSQMKESSSSDSNSSGCLVSSESQVEVSSNLSDASEGHVVKEAQGPKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSMAVLNFPEEVVRESLKDMPNKPWEDGSSPVLALKKKHTMRRKSKATNKKPKRDHHHGNVLSQNVLVLEDLGSDYLEQLLSLTSSSSSSDHVFF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01650 244 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vian3g01650 244 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Vian3g01650 244 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Vian3g01650 244 MobiDBLite consensus disorder prediction 186 206 - -
Vian3g01650 244 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Vian3g01650 244 MobiDBLite consensus disorder prediction 77 103 - -
Vian3g01650 244 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Vian3g01650 244 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Vian3g01650 244 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vian3g01650 244 FunFam Ethylene-responsive transcription factor 2 99 159 - -
Vian3g01650 244 PANTHER DNA-BINDING DOMAIN 56 236 IPR044808 GO:0003700|GO:0009873
Vian3g01650 244 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
Vian3g01650 244 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01650 Vian-Chr3 18320550 18321284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01650 65 238 AP2-EREBP Transcription Factor Family AT3G23240 54.286 1.05e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian3g01650 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01650 K14516 - gmx:100784784 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00993 6 27223015 27223593 Vian3g01650 3 18320550 18321284 ECH
Vian3g01650 3 18320550 18321284 Vian3g01650 3 18320550 18321284 ECH