Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01649 ATGGAGGGAGGAAGATCTTCGGTTTCTAATGGAAATGTTGAGGCTCGGTATAGAGGGATTCGGAGAAGGCCATGGGGAAAGTTTGCTGCAGAGATTCGTGACCCTACAAGGAAAGGGACTCGGATATGGCTTGGAACCTTCGAAACTGCAGAACAAGCTGCACGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGCCACAGAGCCATTCTCAACTTCCCAAATGAGTATCAGTCTTCTAATCCAAACTCTTCTTTGCCTATGCCTTTAACAACACTTCCACCTCCTTCCTCTTCCTCTTCCTCTTCTTCTTCTTCCTATTCTTCTTCCTATTCTTCTTACTCCATTGATAACCTTGCGGGACCTGTTTTTTCTGGAGAAAGTATGCAAGGTGATGATACTTTTGAGTTGGAGTACTTGGACAATAAGTTGCTTGAAGAACTCCTTCAGATGCAAGATAACAGACATCTCTTCAAGTGA 480 0.4396 MEGGRSSVSNGNVEARYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFETAEQAARAYDAAAFHFRGHRAILNFPNEYQSSNPNSSLPMPLTTLPPPSSSSSSSSSSYSSSYSSYSIDNLAGPVFSGESMQGDDTFELEYLDNKLLEELLQMQDNRHLFK 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01649 159 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Vian3g01649 159 MobiDBLite consensus disorder prediction 75 107 - -
Vian3g01649 159 PANTHER DNA-BINDING DOMAIN 13 148 IPR044808 GO:0003700|GO:0009873
Vian3g01649 159 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Vian3g01649 159 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Vian3g01649 159 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Vian3g01649 159 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Vian3g01649 159 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vian3g01649 159 FunFam Ethylene-responsive transcription factor 2 15 75 - -
Vian3g01649 159 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Vian3g01649 159 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01649 Vian-Chr3 18284871 18285350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01649 14 156 AP2-EREBP Transcription Factor Family AT3G23230 55.556 2.15e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian3g01649 AP2 8.4e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01649 3 18284871 18285350 Vian3g01649 3 18284871 18285350 ECH