Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01643 ATGGCACTGAACAAGAATCACTCCTACAACAACAAACTTGGATATGAAGCTCTCCCACCCATCAAAGCCCTGGCTGAAACACTTCAACACCAACCACAACCTTCTTCCTCAGACTATGCTTTTCCAATATTTGTCATTGTTGTGCTCAGTATCTTAGCCACTGTTTTGTTGCTCCTCAGCTACTTCACTTTCTTAACCAAATACTGCTCAAATTGGCGTCAAGTTAACCCAATGAGATGGATTTCCCTCCTGAGAATGCGACACAATGAGGATCCCTTCATAGCATTCTCTCCTGCTATGTGGAACCGAGGACTTGATGAGTCTGTCATCAGAGAAATCCCAACTTTTCAGTTCATAAAAGGAGAAGAAGGTGAGGATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGGCTGAGTTTAAGGAACATGATGTGCTAAAAGTTCTTCCCAATTGCAACCATGCCTTTCATTTGGACTGCATTGACGTGTGGCTTCAGGCCAATTCCAATTGCCCCCTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCATTGGATCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAATATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTGGGAGGAGAGCCTGGAGCAGTGCTTCCACAGGTGCAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATAGAAATCACTCTACAAGGAAGGTGGAGCACTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGACCAATTTCTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTATTTGGATGCTCAAGTCATAATACAACAAAACAGGCATCAGAATGAGGCTAGTGCCAGTGAGTACTATAACAGCAGATGTAGAAGAGCATTCTTCCCATTTTGTTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTCTGGAGAATGATGTTTAG 1038 0.4287 MALNKNHSYNNKLGYEALPPIKALAETLQHQPQPSSSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISLLRMRHNEDPFIAFSPAMWNRGLDESVIREIPTFQFIKGEEGEDQSVYGCVVCLAEFKEHDVLKVLPNCNHAFHLDCIDVWLQANSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGAVLPQVQQERNDSRGSLAHRNHSTRKVEHLKPRKCHHVSIMGDECIDIRKKDDQFLIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRHQNEASASEYYNSRCRRAFFPFCYGKGSKNAVLPLENDV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01643 345 Pfam Ring finger domain 132 174 IPR001841 -
Vian3g01643 345 CDD RING-H2_EL5-like 132 174 - -
Vian3g01643 345 SUPERFAMILY RING/U-box 109 179 - -
Vian3g01643 345 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Vian3g01643 345 SMART ring_2 132 173 IPR001841 -
Vian3g01643 345 FunFam E3 ubiquitin-protein ligase ATL6 96 180 - -
Vian3g01643 345 PANTHER RING-H2 FINGER PROTEIN ATL16 25 342 IPR044600 GO:0016567|GO:0016740
Vian3g01643 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 180 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01643 Vian-Chr3 18184285 18185322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01643 32 308 C3H Transcription Factor Family AT1G04360 44.337 1.87e-73 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01643 K19041 - gmx:100809883 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01643 3 18184285 18185322 Vian3g01643 3 18184285 18185322 ECH