Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01639 ATGTCTAACAATGAACTTGCATCTGGGATGATTTATGTGAAATTCAGGCCTCACCTTCTTATGTTATTCATTCAGATGCTTCTTTCGTTTCTCTATTTCCTTGTAGAGGCTTCACTAAGCAAAGGGATGAACCCTCATGTTTTTGTTACCTATAGGCACGTTATTGGGGGCATAGCTGTGCTTCCTTTTGCTTATGTTCGTGAAAGAAAATTATGGCCAAAGTTGACTATGACAATGTTCATTGAGCTATTTTTTCTATCCCTCTTCGGGACCAGTCTTACCCTGAACATGTTTTTCGCAAGCTTGAAATATACCACTCCTTCCTTTGATGCATCCATGACTAACACAATCTCATCCCTTACTTTTATACTTGCAGTTGCACTCAGATTAGAGGTTGTTGATGTTAAGAAGCCTCGTGGAGTGGCTAAAGTTTTTGGAACCGTGTTATCTTTGATTGGTGCATTGATAATGACTTTGTATAAAGGGCATACGATACAAAGCTTACGGGGTGCCCCGTTCCACGTCAGAGGCAATTTTGTTCATAATAACTGGATTAAAGGATCACTTTTGGCTGGTGCAAGTTGCATATCATGGTCTTTATGGTTCATACTACAGGCAGTCATAGCGAAGAAATATCAAGCACAACTGTCACTAACAGTTTGGATAAATTGCATGGGTGCAGCACAGTCTGCCATCTTCGCTGTAATCGTGGAACATAAGCCTAGAGCATGGCTCATTACATCCACTGTGGAACTCTGTTGCGTTTTTTATGCTGGAGCTATATGTGGTGGTTTAGTTATATTCATCCAATTCTGGACTGCAGAACAAAAAGGGCCAGTCTTTGTCAGTATGTTTAATCCCCTTGGAACAATTTTGGTGGCTATCTTAGCATATTTTCTTTTTGGTGAACAACTCCACACAGGCAGTTTATTGGGAGTAGTGTTTGTGATAATTGGTCTATACTTACTGTTATGGGGAAAAGAAAGTGATCGAGATTACAACTCACAGGAATCTTTAGCAACAGATGTTGAGCAGAGAGAATGTAGGACACAAATAAAGATTTCAGCCGAGCAAGAGGTACCGCAGAGGAACGTATCACAGGACACCAATTAA 1113 0.4043 MSNNELASGMIYVKFRPHLLMLFIQMLLSFLYFLVEASLSKGMNPHVFVTYRHVIGGIAVLPFAYVRERKLWPKLTMTMFIELFFLSLFGTSLTLNMFFASLKYTTPSFDASMTNTISSLTFILAVALRLEVVDVKKPRGVAKVFGTVLSLIGALIMTLYKGHTIQSLRGAPFHVRGNFVHNNWIKGSLLAGASCISWSLWFILQAVIAKKYQAQLSLTVWINCMGAAQSAIFAVIVEHKPRAWLITSTVELCCVFYAGAICGGLVIFIQFWTAEQKGPVFVSMFNPLGTILVAILAYFLFGEQLHTGSLLGVVFVIIGLYLLLWGKESDRDYNSQESLATDVEQRECRTQIKISAEQEVPQRNVSQDTN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01639 370 Pfam EamA-like transporter family 20 158 IPR000620 GO:0016020
Vian3g01639 370 Pfam EamA-like transporter family 186 324 IPR000620 GO:0016020
Vian3g01639 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 162 - -
Vian3g01639 370 PANTHER WAT1-RELATED PROTEIN 17 335 IPR030184 GO:0016020|GO:0022857
Vian3g01639 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 328 - -
Vian3g01639 370 Gene3D - 244 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01639 Vian-Chr3 18160723 18162606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01639 2 338 Nodulin-like Gene Family AT3G18200 36.283 1.02e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01639 - - gmx:100808275 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01639 3 18160723 18162606 Vian3g01639 3 18160723 18162606 ECH