Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01630 ATGGGAAGAGCTCCTTGTTGTGACAAGGCCAATGTAAAGAAAGGGCCATGGAGTCCTGAGGATGATGAAAAGCTAAGAGATTTCATAGAGAAACATGGTACAGGTGGAAACTGGATTTCCCTCCCACATAAAGCTGGTTTGAAAAGATGTGGCAAAAGTTGCAGACTGAGATGGCTTAATTATCTGAGGCCAAACCTTAAGCATGGGGAGTTTTCTGAAGATGAAGATAGAATAATCTGCACTCTCTTTGGTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGAATAATGAACCCTTCAGCACTGAAGAAACCTCACCAAGTTACCCTCTCATCCATGCTTCAAAACTCAACACCCTCTACATCCTCCTCATCTTCATTATCACTAAAAAGAAATCACAGCTCAAACCATCAACCCCATGGGCCTTTCACAAGCCCTGACACCATTTCATATGAAAGTCTTCTTAGTGGAAACTCTTGTTCTACTTTTGAGAGCCTTTACCAAGTTAATTGTGGGTTTATGCTTGAAACAAGTTGCAGCTCTTCTTCAGATGGAAGCTGCAACAACAATAATCAGATGAATCATGTGAAAGGAGCAGAAGTTGGAGATGTTGGTGTTGGAGGTTTTGGTGACCAAATTGGTGGTCTCAGTTACCTCTCTAGTGGGGTGGAAGATACCCAAAAGTTGGTGTCCTCCAATGGTGGTAGGACTAGTGGATGGACAGGTGAAGAAAGTAGATTATGGGGAGAAAGTCCATTAGAGTATGGTTTAGAAGAAATTAAAGAGCTAATGAGCACAAGTAGTTGCAACAACTTTATGTTTGATGACAGCAAGACAGGGGAAATGGTGATGTACTACTGA 933 0.4202 MGRAPCCDKANVKKGPWSPEDDEKLRDFIEKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICTLFGSIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGIMNPSALKKPHQVTLSSMLQNSTPSTSSSSSLSLKRNHSSNHQPHGPFTSPDTISYESLLSGNSCSTFESLYQVNCGFMLETSCSSSSDGSCNNNNQMNHVKGAEVGDVGVGGFGDQIGGLSYLSSGVEDTQKLVSSNGGRTSGWTGEESRLWGESPLEYGLEEIKELMSTSSCNNFMFDDSKTGEMVMYY 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01630 310 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vian3g01630 310 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vian3g01630 310 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vian3g01630 310 FunFam Transcription factor RAX3 7 68 - -
Vian3g01630 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vian3g01630 310 Gene3D - 69 138 - -
Vian3g01630 310 MobiDBLite consensus disorder prediction 131 169 - -
Vian3g01630 310 CDD SANT 16 62 IPR001005 -
Vian3g01630 310 Gene3D - 7 68 - -
Vian3g01630 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vian3g01630 310 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vian3g01630 310 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vian3g01630 310 SMART sant 13 64 IPR001005 -
Vian3g01630 310 SMART sant 67 115 IPR001005 -
Vian3g01630 310 CDD SANT 70 113 IPR001005 -
Vian3g01630 310 PANTHER OS09G0431300 PROTEIN 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01630 Vian-Chr3 18042250 18043724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01630 1 119 MYB Transcription Factor Family AT5G57620 84.034 2.44e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g01630 Myb_DNA-binding 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01630 K09422 - gmx:100820139 442.195