Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01627 ATGTCACAGAATTCTGAGGAGATAAAGACGGTTGAACAGTGGAGATGGTCTGAAATGCAAGGCCTTGAGCTTATGTCCTCTTCTGCTCCTGTTTCTCATTCACATGAATCCAACTCAACATTGGAAGAAAAAAAAGAAAGGGTAATGGAGGAGGCTTCAGTAGCCAAGAAAGATGCTTCTGCTTCTAATGGTACTTGTAGTGGTGGTGGTGGGGATAAGAAGGGTGAGAGCATTTCTTCTGTTCGGTTTGGTGAGCTTTTCAGATTTGCGGATGGGTTGGATTACATTTTAATGGCAATTGGAACGGTTGGAGCATTTGTACATGGTTGCTCCTTGCCACTCTTTCTTCGTTTCTTCGCTGATCTCGTGAATTCCTTTGGTGCCAATGCGAATAACTTGGACAAGATGACTCAGGAAGTGGTGAAGTATGCGTTTTACTTCCTGGTGGTGGGGGCTGCCATATGGGCATCCTCCTGGGCAGAGATTTCGTGCTGGATGTGGACAGGTGAGAGGCAATCAACGAGAATGAGGATCAGGTATCTGGAGGCAGCGTTGGACCAGGACATTCAATTCTTTGACACCGAGGTTCGAACATCCGATGTTGTGTTTGCCATTACCAGTGATGCTGTTATGGTACAAGATGCCATTAGCGAGAAGTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCGGTCTGGCAACTGGCACTGGTAACCCTCGCTGTGGTCCCCATAATTGCAGTAATCGGAGGCATTCACACTACCACCTTGGCCAAGTTATCTAGTAAAAGCCAGGATGCTCTATCTCAAGCTGGTAACATTGTGGAACAGACAGTTGTTCAAATTCGAGTGGTTTTGGCTTTTGTTGGGGAGACTAGAGCACTGCAGGCCTATTCCTCTGCGTTGAGGACTGCACAGAAGATTGGCTACAGGACTGGATTTGCAAAAGGAATGGGATTGGGGGCCACATACTTTGTTGTTTTCTGTTGCTATGCTCTTTTGCTTTGGTATGGTGGCTATTTGGTTAGACACCACTACACCAACGGAGGACTTGCCATTGCCACCATGTTTTCTGTTATGATTGGTGGACTGGCTTTAGGACAGTCTGCACCTAGCATGGCTGCATTTACCAAGGCCAGAGTTGCTGCTGCTAAGATTTTTCGTGTGATAGATCACAAGCCGGGTATAGACAGAAAGAGTGAATCGGGTTTGGAGTTAGAGAGTGTTACAGGACTGGTAGAGTTGAGAAATGTGGACTTTTCATACCCCTCTAGGCCAGAGGTTATGATCCTCAACCATTTCTCATTGAGTGTACCTGCTGGCAAGACCATTGCTCTTGTAGGTAGCAGTGGATCAGGAAAAAGCACAGTTGTGTCCCTCATTGAGAGATTCTATGATCCTTTTTCAGGACAAGTAATGCTAGATGGGCATGACGTTAAGACATTGAAGCTTAGATGGTTGAGACAGCAAATAGGACTGGTGAGCCAAGAACCTGCTTTGTTTGCTACCACAATTAGAGAAAACATACTCTTGGGTAGGCCTGATGCAGATCAGGGTGAGATTGAAGAAGCTGCCAGAGTGGCCAATGCTCACTCCTTTATCATCAAACTTCCCGAAGGCTATGAAACTCAGGTAGGGGAGAGAGGCCTGCAACTTTCAGGAGGACAAAAGCAGAGAATAGCAATTGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGATGAGGCCACAAGTGCATTGGACTCAGAGTCAGAAAAGCTGGTTCAGGAGGCCCTTGATCGGTTCATGATTGGCAGAACAACTCTTGTAATTGCTCATCGCCTCTCCACAATTCGGAAAGCTGACCTTGTGGCTGTGCTTCAGCAAGGAAGTGTCACTGAAATTGGAACTCATGATGAGCTCTTTGCTAAAGGTGAAAATGGAGTCTATGCCAAGCTTATCCGGATGCAGGAGATGGCACATGAAACTTCTATGAGTAATGCCAGAAAGAGTAGTGCTAGGCCTTCAAGCGCCAGAAACTCTGTAAGCTCACCCATTATAGCACGAAATTCTTCTTATGGGCGATCACCATACTCACGCAGACTATCTGACTTCTCTACATCTGATTTTAGTCTGTCCCTTGATGCATCACATCCAAATCACAGGCCTGAAAAGCTTGCCTTCAAAGATCAAGCTAGTTCCTTCTGGCGACTTGCAAAAATGAACTCTCCTGAATGGCTATATGCCTTAATTGGTTCTGTAGGATCTGTCGTTTGTGGATCCCTCAGTGCATTTTTTGCTTATGTTCTTAGTGCTGTCCTCAGCGTTTATTACAATCCAAACCACAGACTCATGATCCAAGAAATTGAAAAGTACTGTTACTTGTTGATTGGGCTATCATCGGCTGCTCTCCTCTTCAACGCATTGCAGCACTCCTTCTGGGATATTGTTGGTGAAAATCTTACAAAACGAGTGAGGGAGAAAATGCTTACTGCAGTGCTTAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAAAGTGCTCGAGTTGCAGCAAGGCTTTCTCTTGATGCCAACAATGTTAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTCATGCTAGTTGCCTGTACTGCAGGGTTTGTATTGCAATGGCGCCTTGCCCTTGTTCTTGTGGCCGTATTCCCGGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGCGACCTGGAAGCTGCTCATGCCAAGGCCACTCAACTAGCAGGAGAGGCGATAGCCAATGTAAGGACAGTTGCTGCTTTTAATTCAGAAAGGAAAATTGTTGGCCTTTTCACATCAAACCTTGAAACTCCACTGCGGCGCTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATATGGAATAGCTCAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCACGGTATATCTGATTTTTCTAAAACAATCCGAGTTTTTATGGTTCTCATGGTCTCTGCTAATGGTGCTGCTGAAACCTTAACCCTGGCCCCTGACTTCATAAAGGGTGGTCGTGCCATGAGATCGGTCTTTGAACTTCTTGACCGAAGAACTGAGATTGAGCCTGATGACCCAGATGCTACCCCTGTTCCTGATCACCTTCGTGGTGAAGTAGAACTCAAGCATGTTGACTTTTCTTATCCAACTAGACCAGATATGTCAGTTTTTCGTGACCTCAGCCTTCGTGCCAGGGCAGGTAAAACTCTTGCCCTTGTAGGGCCTAGTGGCTGTGGCAAGAGTTCAGTCATTGCACTTATACAAAGGTTTTATGATCCAACATCCGGGAGGGTCATGATTGATGGAAAGGACATAAGGAAATACAATCTCAAGTCTCTTAGAAGGCACATTGCTGTGGTGCCTCAGGAGCCATGCCTATTTGCTACTACTATTTATGAGAACATTGCTTATGGACATGACTCAGCCACTGAAGCTGAGATCATAGAGGCTGCAACTCTTGCCAATGCTCACAAGTTCATATCTTCTCTGCCTGATGGATTCAAGACATTTGTTGGTGAGAGGGGAGTTCAACTATCAGGGGGACAAAAGCAAAGAATAGCAATTGCTAGAGCTTTTATGAGGAAGGCAGAACTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGATCTGTTCAGGAGGCCTTGGACCGTGCCTGTGCTGGAAAAACTGCCATCATTGTTGCACACAGGTTATCAACTATTAGGAATGCCAATCTGATTGCAGTGATGGATGATGGGAAGGTAGCAGAGCAAGGCTCCCATTCGCAGTTACTAAAGAATTACCCTGATGGGATCTATGCACGCATGATTCAGTTACAAAGGTTAACAAATAACCAAGTTATTGGAGTGGCCGCAGGATCAAGTTCTTCAGCAAGAACAAAAGATGATGAAAGAGAAGGCTAA 4032 0.4536 MSQNSEEIKTVEQWRWSEMQGLELMSSSAPVSHSHESNSTLEEKKERVMEEASVAKKDASASNGTCSGGGGDKKGESISSVRFGELFRFADGLDYILMAIGTVGAFVHGCSLPLFLRFFADLVNSFGANANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIRYLEAALDQDIQFFDTEVRTSDVVFAITSDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPIIAVIGGIHTTTLAKLSSKSQDALSQAGNIVEQTVVQIRVVLAFVGETRALQAYSSALRTAQKIGYRTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFSVMIGGLALGQSAPSMAAFTKARVAAAKIFRVIDHKPGIDRKSESGLELESVTGLVELRNVDFSYPSRPEVMILNHFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPFSGQVMLDGHDVKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQGEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVTEIGTHDELFAKGENGVYAKLIRMQEMAHETSMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNHRPEKLAFKDQASSFWRLAKMNSPEWLYALIGSVGSVVCGSLSAFFAYVLSAVLSVYYNPNHRLMIQEIEKYCYLLIGLSSAALLFNALQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARVAARLSLDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSERKIVGLFTSNLETPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDPDATPVPDHLRGEVELKHVDFSYPTRPDMSVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLPDGFKTFVGERGVQLSGGQKQRIAIARAFMRKAELMLLDEATSALDAESERSVQEALDRACAGKTAIIVAHRLSTIRNANLIAVMDDGKVAEQGSHSQLLKNYPDGIYARMIQLQRLTNNQVIGVAAGSSSSARTKDDEREG 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01627 1343 Gene3D - 1066 1317 IPR027417 -
Vian3g01627 1343 Gene3D - 412 662 IPR027417 -
Vian3g01627 1343 SUPERFAMILY ABC transporter transmembrane region 86 406 IPR036640 GO:0005524|GO:0016020
Vian3g01627 1343 MobiDBLite consensus disorder prediction 665 686 - -
Vian3g01627 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 661 IPR027417 -
Vian3g01627 1343 Gene3D ABC transporter type 1, transmembrane domain 735 1042 IPR036640 GO:0005524|GO:0016020
Vian3g01627 1343 Pfam ABC transporter 1096 1244 IPR003439 GO:0005524
Vian3g01627 1343 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1077 1313 IPR003439 GO:0005524
Vian3g01627 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1068 1316 IPR027417 -
Vian3g01627 1343 PANTHER ABC TRANSPORTER B FAMILY 56 766 IPR039421 -
Vian3g01627 1343 FunFam ABC transporter B family member 19 1043 1065 - -
Vian3g01627 1343 CDD ABC_MTABC3_MDL1_MDL2 1077 1316 - -
Vian3g01627 1343 Gene3D ABC transporter type 1, transmembrane domain 1043 1320 IPR036640 GO:0005524|GO:0016020
Vian3g01627 1343 SMART AAA_5 449 635 IPR003593 GO:0016887
Vian3g01627 1343 SMART AAA_5 1104 1297 IPR003593 GO:0016887
Vian3g01627 1343 CDD ABC_MTABC3_MDL1_MDL2 422 661 - -
Vian3g01627 1343 Gene3D ABC transporter type 1, transmembrane domain 85 676 IPR036640 GO:0005524|GO:0016020
Vian3g01627 1343 FunFam ABC transporter B family member 1 412 662 - -
Vian3g01627 1343 SUPERFAMILY ABC transporter transmembrane region 741 1064 IPR036640 GO:0005524|GO:0016020
Vian3g01627 1343 Pfam ABC transporter 440 589 IPR003439 GO:0005524
Vian3g01627 1343 ProSitePatterns ABC transporters family signature. 1216 1230 IPR017871 GO:0005524|GO:0016887
Vian3g01627 1343 FunFam ABC transporter B family member 1 85 420 - -
Vian3g01627 1343 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 422 658 IPR003439 GO:0005524
Vian3g01627 1343 Pfam ABC transporter transmembrane region 755 1024 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian3g01627 1343 Pfam ABC transporter transmembrane region 99 371 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian3g01627 1343 CDD ABC_6TM_Pgp_ABCB1_D2_like 743 1059 - -
Vian3g01627 1343 CDD ABC_6TM_Pgp_ABCB1_D1_like 98 395 - -
Vian3g01627 1343 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 387 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian3g01627 1343 FunFam ABC transporter B family member 1 733 1042 - -
Vian3g01627 1343 Coils Coil 38 58 - -
Vian3g01627 1343 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 754 1041 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian3g01627 1343 MobiDBLite consensus disorder prediction 25 74 - -
Vian3g01627 1343 MobiDBLite consensus disorder prediction 37 54 - -
Vian3g01627 1343 ProSitePatterns ABC transporters family signature. 561 575 IPR017871 GO:0005524|GO:0016887
Vian3g01627 1343 FunFam ABC transporter B family member 1 1067 1317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01627 Vian-Chr3 17967315 17973350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01627 73 1340 Calmodulin-binding Proteins AT2G36910 88.180 0.0 2298