Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01618 ATGCTTAGGTTTTTTGTTGGGAGGATACAAAAGGGTCTTTCACTGTTTGTGGCTAGAAGGCCTGCATTCAGCTACTTGAGTGAAGACGGTGCCCCTAATGAGGCACCGGATGATGTTATGGAAGGTTATTTTGCTGTTGTTGCAATGAAGGGTAAGGAAAGAAAAAGGTTCATTGTTGGGTTAGATTACTTGTCTGATCCTGCATTCTTGGGACTGTTGGATCAAGCTCAAGAAGAGTATGGTTTCCGACACCAGGGAGCTCTTGCACTCCCTTGTCGACCTCAGGAGTTGCAGAAGATTCTAGATGCTCCAAAAGCATAA 321 0.4486 MLRFFVGRIQKGLSLFVARRPAFSYLSEDGAPNEAPDDVMEGYFAVVAMKGKERKRFIVGLDYLSDPAFLGLLDQAQEEYGFRHQGALALPCRPQELQKILDAPKA 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01618 106 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 100 IPR003676 GO:0009733
Vian3g01618 106 Pfam Auxin responsive protein 33 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01618 Vian-Chr3 17824176 17824496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01618 34 101 Calmodulin-binding Proteins AT3G43120 45.588 9.92e-14 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01618 - K14488 gmx:100818734 170.244