Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01603 ATGAGGAACCATGCTTCTTCCCTCTCTTTCCTTTTCCTCTTCATCCCTTTCTTCCCCACGATTCAATGCGCCGATAACACTTTCGCCCCATCCTTTTACACCGAAGAGATATACAAGGAGCTTGAAAACCTCGCCATTCTTTTAAACAAGGATATCAAAGCAGGTTTAGGTTTCTGCGTCAAGGATGTGCACAAAGATTGGGAGGAAGCATTTGATTTTAAAGGAAGGTTGGATTTCGTGGATTCTTGTGTTAAGAAAAAAGGGGATTTCAGAGATAGAATATGTACTGTGTCTGAAATAAGGTATTACTTCCATGGTTTCCTGGAACAAGGGGCAACATCTAGCAACTATGTAAAACCTAACAGGAATTGCAACTTGACTTCGTGGGTTTCTGGTTGTGAACCTGGATGGAGTTGTAGTGCTGGCAAAAATTTTGACCTCAAAAAAGACATAAAGGACATTCCCTTTAGAACCAGCAACTGTCAGGCTTGTTGTGAGGGGTTTTTCTGCCCTCAAGGATTGACTTGCATGATACCTTGCCCACTAGGTTCTTATTGTCCACTTGCAAAACTGAATAATGCGACTGGAATATGTGACCCATATAGTTACCAAATACCTCAGGGAGAAACAAATCATAGTTGTGGCAGTGCTGACATATGGACGGGCGTGGTGAACAATAGTGATATCTTTTGTTCTCCAGGATCATACTGCCCCACTACAACACAATGCTCCAGCTTGAGTTCCTGCAATCCAAACACAGCAAACCAAAATATGCATGCTTATGGCGCTTTACTTATTATCATAGCATTTGTGTTTTATTTTACATGCACATTATTGGAGCTTATGGTTGTCTTGTTGCACAATGAAGAAATGCAACATGGTATTGTCTTGGAGCTTATGGTTGTCTTGGTTGCATTGAGCACTCTCCTGATCTTCATTTATAATTGTTCTGATCAAGTTCTAGTTACTCGAGAAAGGAGAAAGGCGAAATCTAGAGAAGCTGCTGCTAAACAGGTAAGGGAAACTGTGCAGGCTAGGGAACGATGGAAAATAGCAAAAGATATTGCTAAGAAAGGTAAAGGGGGAGGATTAGGTGAGCAATTATCTCGAACCTTTTCTCGGAAAAAATCAGCGAAATCAGATACCGTAAAGGTTGGTAACCAAGCTAAACGTGGTATGGGAGATACGTTTTTGCCATCGGTACAAAATTCTTCAAGCTATGAGCAACAGTCTGCAGCTTCAGACGTGCAAAAAAAGGAACCTACCAACCTTACTAAAATGTTGAATTCCCTTGAGGATGACCCACATAGCAATGAAGGATTCAACCTACAAATTGGAGATAAAAACATCAAAAAGCAGATGCCAAAGGGCAAGAATTTACACACACAAAGCCAAATTTTAAGGTATGCTTATGGTCAAATTGAGAAGGAGAAAGCTCAACAAGAGAAAAACAAGAACTTGACTTTCTCCGGAGTTATTTCGATGGCCACAGAAGGTGAGGTTCGAACAAGGCCTGTGATTGAGGTAGCTTTTAAGGACTTAACTCTCACTTTGAAAGGTAAAAGAAAACATCTACTGAGATGTGTGTATGGTAAACTCATGCCGGGTAGAGTTTCTGCTGTGATGGGTCCCTCAGGAGCTGGCAAAACTACATTTCTTTCTGCATTGGCAGGGAAGGCAAGAGGATGCACTATGACAGGATCAATTCTAATTAATGGAAAGGCCGAATCCATTCACTGTTATCGGAAAATTATTGGTTTTGTTCCACAAGATGATATTGTGCATGGGAACTTGACCGTGGAAGAAAATCTTCGTTTCAGTGCAAGATGCAGACTATCCGCGGATATGCCAAAACCAGACAAGGTTCTGATTGTTGAAAGAGTGATTGAGTCCTTAGGACTCCAGGCAGTGAGGGATTCCCTTGTTGGGACAGTAGAAAAACGAGGTATATCTGGGGGACAACGTAAACGTGTAAATGTAGGGATGGAAATGGTTATGGAGCCATCATTATTAATCTTAGATGAACCTACAACTGGTTTAGACAGTGCATCTTCCACTTTATTGCTTAAAGCACTTCGTCGTGAAGCACTAGAAGGGGTAAATATCTGCATGGTACTTCATCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAGTGTTTCTAGCCAAAGGTGGTCTTACTGCATATCATGGTCCTGTTAAGAAAGTAGAAGAATACTTTGCTGGCATTGGAATCAATGTACCTGATAGAGTGAATCCTCCCGACCATTTCATTGACATTTTGGAAGGTTTAGTGAAACCAAATGGAGCTGTGACTCATGAGCAGCTTCCTGTCAGATGGATGTTACATAACAGTTACCCAGTACCACCGGATATGCTTCATTTTGCTGATGAAATTGCTGCAGCCTCAACAAATAGCACTGAGGCAAATCCAACAAAGCCCCCAGAGGAAGTTGATGATCAATCCTTTGCTGGAGAGTTTTGGGAGGATATGAAGAGTAATGTTCAGATGCGAAAAGATCATATAGAAGCAACCTTCTTAAAGACTAAGGACTTGTCTAATCGAAGAACTCCTGGTGTAGCTCGACAATACAGATACTACCTTGGACGGGTTTGTAAGCAGACGCTAAGAGAAGGAAAATCACAAGCAGTTGACTATCTTCTTTTATTGGTTGCTGGTGCTATATTAGGAACTCTTACTAAAGTAAATGACGAAACCTTTGGGTCCCTCGGATATACCTATACCGTTATTGCTGTCTCTTTACTTTGCAAGATTTCAGCTCTGAGATCATTTTCTCTGGATAAATTACAATATTGGAGGGAGAGTGCATCTGGAATCAGCAATCTGGCACATTTTTTGGCCAAAGATTCAATTGATATTTTCAATACAGTCATAAAACCTGTAGTTTATCTGTCCATGTTCTATTTTTTTAGCAATCCAAGGTCAAGTTTCGCAAGTAATTATGTCATTTTGCTCTGCCTTGTGTACTGTGTAACTGGCATGGCATATATAATGGCAATTTATTTTGAGCCTGCTCCAGCACAATTGTGGTCAGTGCTTCTCCCAGTTGTTATGACTCTCATTGCAAACCAGAAGAAAGACACTCTCTTTATGAAGATCCTTGTAAAGTTGTGCTACCCAAATTGGGCTTTAGAGGCATTTATCATTGCAAATGCTGAAAGGTACACTGGAGTTTGGTTGATTACTCGGTGTAGTTCGCTAATGAATAATGGCTATAATGTCGGAGACTGGCCTATTTGTATGCTTGCCCTCGTTTTGTATGGTATAATTGCTCGAGTTGTGGCCTTCTTTTGTTTAGTGATCACTCAGAAGAAGTGA 3345 0.4075 MRNHASSLSFLFLFIPFFPTIQCADNTFAPSFYTEEIYKELENLAILLNKDIKAGLGFCVKDVHKDWEEAFDFKGRLDFVDSCVKKKGDFRDRICTVSEIRYYFHGFLEQGATSSNYVKPNRNCNLTSWVSGCEPGWSCSAGKNFDLKKDIKDIPFRTSNCQACCEGFFCPQGLTCMIPCPLGSYCPLAKLNNATGICDPYSYQIPQGETNHSCGSADIWTGVVNNSDIFCSPGSYCPTTTQCSSLSSCNPNTANQNMHAYGALLIIIAFVFYFTCTLLELMVVLLHNEEMQHGIVLELMVVLVALSTLLIFIYNCSDQVLVTRERRKAKSREAAAKQVRETVQARERWKIAKDIAKKGKGGGLGEQLSRTFSRKKSAKSDTVKVGNQAKRGMGDTFLPSVQNSSSYEQQSAASDVQKKEPTNLTKMLNSLEDDPHSNEGFNLQIGDKNIKKQMPKGKNLHTQSQILRYAYGQIEKEKAQQEKNKNLTFSGVISMATEGEVRTRPVIEVAFKDLTLTLKGKRKHLLRCVYGKLMPGRVSAVMGPSGAGKTTFLSALAGKARGCTMTGSILINGKAESIHCYRKIIGFVPQDDIVHGNLTVEENLRFSARCRLSADMPKPDKVLIVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKKVEEYFAGIGINVPDRVNPPDHFIDILEGLVKPNGAVTHEQLPVRWMLHNSYPVPPDMLHFADEIAAASTNSTEANPTKPPEEVDDQSFAGEFWEDMKSNVQMRKDHIEATFLKTKDLSNRRTPGVARQYRYYLGRVCKQTLREGKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKISALRSFSLDKLQYWRESASGISNLAHFLAKDSIDIFNTVIKPVVYLSMFYFFSNPRSSFASNYVILLCLVYCVTGMAYIMAIYFEPAPAQLWSVLLPVVMTLIANQKKDTLFMKILVKLCYPNWALEAFIIANAERYTGVWLITRCSSLMNNGYNVGDWPICMLALVLYGIIARVVAFFCLVITQKK 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01603 1114 Pfam ABC transporter 531 677 IPR003439 GO:0005524
Vian3g01603 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 732 IPR027417 -
Vian3g01603 1114 CDD ABCG_EPDR 507 733 - -
Vian3g01603 1114 Pfam ABC-2 type transporter 707 1114 IPR043926 GO:0140359
Vian3g01603 1114 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 509 750 IPR003439 GO:0005524
Vian3g01603 1114 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 472 1101 - -
Vian3g01603 1114 Gene3D - 499 745 IPR027417 -
Vian3g01603 1114 MobiDBLite consensus disorder prediction 397 421 - -
Vian3g01603 1114 FunFam ABC transporter G family member 24 503 745 - -
Vian3g01603 1114 ProSitePatterns ABC transporters family signature. 650 664 IPR017871 GO:0005524|GO:0016887
Vian3g01603 1114 SMART AAA_5 535 727 IPR003593 GO:0016887
Vian3g01603 1114 MobiDBLite consensus disorder prediction 358 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01603 Vian-Chr3 17613330 17619823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01603 536 729 Calmodulin-binding Proteins AT2G36910 28.713 1.39e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01603 - - gmx:100812387 1877.83