Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01598 ATGGAGCTCTCTGTGATTGCAAGAAACATGGAAGAAGTTGTCTTGTTGGTTGATGATTTGAAATCGCTTTCTGGGATTTCTCGCTGTAGAATATGTCATGAAGAAGAATTTGAGAGCACCAAAACCTTGGAAGCTCCTTGTGCTTGTTCAGGGACAGTCAAGTTTGCTCACAGAGAGTGCATTCAGACGTGGTGCAATGAGAAAGGAAACACAACTTGTGAAATATGTCTCCAGCAATACGAACCTGGATATACAGCAGTTCAGAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATCTCAATGACTGAACAAGAACCGTTAAACGCAAGAATAGTTGAGGGAAACAATTACTCTGAATGCACATATGCTGCAGATAGAAGCGCGGCTTGTTGTCGATCCCTGGCTTTAGCTTTTACTCTTATCTTGCTTGTAAGACATCTTTTTGCACTGCTTACGAATGGAATGGAAGATTATCCGTTTACAATTCTTACGGTATTTTTACTGAGGGCCAGTGGAATTATTATACCGATGTACATAATTATTAAGACGATCGGAGCCATACATAATAATATCAAACGCTATCATCATCTTCATCAGGATTCTGATGATGACTCCTGGATATCAGATGGAGATGAGGAAGAAAATGAGACAGCAGATGATGCAATTTTAAGACATTGA 699 0.4006 MELSVIARNMEEVVLLVDDLKSLSGISRCRICHEEEFESTKTLEAPCACSGTVKFAHRECIQTWCNEKGNTTCEICLQQYEPGYTAVQKKSQIADAAMTIRDSLQISMTEQEPLNARIVEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFALLTNGMEDYPFTILTVFLLRASGIIIPMYIIIKTIGAIHNNIKRYHHLHQDSDDDSWISDGDEEENETADDAILRH 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01598 232 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Vian3g01598 232 Pfam Protein of unknown function (DUF3675) 82 191 IPR022143 -
Vian3g01598 232 SUPERFAMILY RING/U-box 28 81 - -
Vian3g01598 232 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Vian3g01598 232 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Vian3g01598 232 SMART ringv_2 28 77 IPR011016 GO:0008270
Vian3g01598 232 FunFam E3 ubiquitin-protein ligase MARCH4 18 86 - -
Vian3g01598 232 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 25 199 IPR033275 -
Vian3g01598 232 MobiDBLite consensus disorder prediction 212 232 - -
Vian3g01598 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 87 IPR013083 -
Vian3g01598 232 CDD RING_CH-C4HC3_MARCH 29 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01598 Vian-Chr3 17547743 17550114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01598 29 76 C3H Transcription Factor Family AT2G37950 44.898 1.84e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01598 - - gmx:100776501 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01598 3 17547743 17550114 Vian3g01598 3 17547743 17550114 ECH
Vian2g02834 2 49230206 49232175 Vian3g01598 3 17547743 17550114 PCT