Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01597 ATGCTGGTGGCTCCGTTTCTGTTTGCAGCATTTGGGACAATTCCATACTTGGCCGAAATCTCATACATAGGTGTGGAAGGTCTCTTTTTCTCCTACTACACTCATAATCATCAACTTCTTGCAATGTACTGCAACTCATCATCAACTTCTGTTGCCTCCAACAAAATCTTCACTCAACCTGTGAATCCTGAAACTGGAGAGCTTCATGGTGAACCCACAATCATGCTATCTAACCCCTTTATCAATGCTAGCTGGATTGGTGAAGCACTTAATGTCTCAACTGGGTTTTCCTCATTCAGAACCAACTGGGTCAATTCTGATCTTTTGTTCCTCACTTCAGCCAGAATCATCAGAAGAGGACTCATCTCTCTTGGCTTTTCTGCAACGCCAATAACTGATTCTGTCATTCGCATTGACAAACAACATGGCACAAGCTCCTATTTAGCTACCAAAGATGGACAAGTTGTTGTGCCAGGGATTCAACTCACCCATTTCCTCATTTCTAATGATACAGTTTCGTTTCAATCACTGAATGCAAATGCTGATGGGGCCACTGTCTCATGCAAGGATCAAACTGCTGCTTCTAGTTTCAATATTAGAGATATTGCATATTCAATTCACTGCTACACCATCGATATAATGGGAATCGAATCGGTGTATGTGTTGGCTGTCCCAAAAGAAGGACATGCAATCATTGATCGGAATTACAAGGAAAAGGGCTTGATAGTGTTTGTGGCAACAATGGTGACTATATTTATAGCTTTCTTCAGTTTCCTATACGTAAACTGCAGAGCCTTTAGGCGAGAAATGCATTTGTGTGCCTCACTGATCAAACAGTGTGAAGCCACCCAACAGGCTGAGAAAAAGAATATGAACAAGAGCACCGCTTTTGCGAGTGCCAGCCATGATGTTCGTGCTTCTCTCGCAGGGATCACCGGTTTGATAGAGATATCTTCAGAATTGGTTGCCCCCGGTTCCGAATTGGAGACCAATCTCAAACAAATGAATGGTTGTACCCAAGACTTACTAGGACTGTTGAATTCTATACTAGACACAAGCAAAATTGAGGCAGGAAAAATGCAACTCGAAGAAGAGGAGTTTGATGTGTTCAATCTCTTAGAAGATGTAGTTGACTTTTACCATCCTGTGGCTGCGAAGAAAGGTGTAGATCTGGTGTTGGACCCTTGTAACGGTTCTGTAGTGGGATATTCACGGGTGAAAGGTGATAGGGGAAAACTAAAACAAGTTCTGAGTAATTTACTGAGCAATGCTGTGAAATTTACCGATGAGGGACATATAGCGGTACGCGCATGGACTCGGAAGCCAAAACTACTGCAGAACTCCACAGTCACTTTTAGCAAATTTGGTTTCAAGCAATATTTATCATGCTTATTTCGTAACAAAACCGAACCACGTAGTGACGTGGAATCCACGCGTTCAATCCAAGAAGATCCTCATTCTATGGATTTTATATTTGAAGTGGATGACACGGGAAAAGGAATTCCTAAAGAGAAATACAAGTCTGTTTTTGAGAATTACGTCCAAATCAAAGATACTGCTCTTGGCCAAGGGGGAACTGGTTTGGGACTCGGGATTGTTCAGTCGCTGGTGCGTTTGATGCATGGAGATATTGAAATTGTGGAGAAGGATACTGGTGAAAGAGGGACATGCTTCAAGTTCAATGTGGTTCTCAGTGTATGTGAGAATGAGGGAGTGTCAGATGGTAGCAGAAGGGAGGGTGTTGGTTGTGGATCAGGAGACAGAATAATAGAATGTGAGGAGCAGCAGACTGTGCAGGCTTCGTGTTCTGGTTCTTCTAGAATTTGTTCCATGAGTCCTAAGTTACGAATGTGCAGCTCTAGTCCAAAGCCTGAGGCTTCCCTTGTGGTTCTTTTGATTGTTGACGAAGAGCGCCAAAGGACTTCACGAAGGTTCATGGAGAGGTTAGGGATCAAAGTGAAAGTTGTGAATACAGGGAAAGGTTTGTTTTATACTCTGAGGAAGATCAACCTGAAGGCTAAGCATTCTAGTGGCCAAAATTCTCCAGGTTCTTCGGATTTGAGTCATTGGTCTACACCTCACAGTTCTCTCGACATAGCCACAAGAGTTTCTTTGAGTTCTATGGATGGAACTGAGCATATGCCTTTAGTTTTCAAGAAAACTGATGTAGGAGCTTCTCCCGGCTTCATCCTTGTTGTGATTGATGCAAATGCAGGACCGTTTTCTGAGCTTTACACGATTGTGTCCAACTTCAAGAAAGACCTTCGCAACCCGTGTAAGGTTGTGTGGTTGGATAAGCCCTTTATGCGTAGAATCAACTTGAAGGCCCTTGGTCAAGATGACATCGTCACATCCAAACCATTTCATGGTACTCGTTTGTTCCAAACCATAAAGCTCCTTCCTGAATTTGGAGGTTCTTGGCAAAGCAATTCTAGTAGAGCTAAGAGGGAAATGGCCAATGAGAGAGCTACATTGAACACTTGCAAGGATCCAGGTTTGTCAAAATACACGTCTCCTCTGCTGGACAGATCACACGTCAGTTCTTCAACTGACGAAAGTACATTCCAAACTGGTGAACAAATTTTGAAGGGAAAACGATCATCGAAGGCAAAAATAAGTCTTGTTCATCATGGAGAAACACAAGAGATTGGAAACTCATCAGGGTCTCAGAAACCCTTGAGGGGTAAGAAGTTTTTGGTTGCTGACGACAGTGCAATTTTGCGCAATATAGCTTCTGCTACTCTGATTTCTCTTGGTGCAACCGTGGAGCAATGTGAGAATGGTGAAGAAGCAGTGAGGTTAGTTGATGAGGGTCTACCTCGGGAGTTTCCTAATCCTCCTTACGATTATATCTTAATGGATTGTCAGATGCCAATAATGGACGGTCTTGAGGCAACAAAGTGGATACGAAAGATAGAGAAAGCTTATGGTGTTCGCATTCCTATCATTGCATTGACTGCTGGAACAGAAAGAATAACGATAGAGAGTGGAATGGACTATCATATGGATAAACCCATTAACAGACAGGATTTACTTAAAGCCATCGCATATATAAATGGTAAAGTGTGA 3069 0.4268 MLVAPFLFAAFGTIPYLAEISYIGVEGLFFSYYTHNHQLLAMYCNSSSTSVASNKIFTQPVNPETGELHGEPTIMLSNPFINASWIGEALNVSTGFSSFRTNWVNSDLLFLTSARIIRRGLISLGFSATPITDSVIRIDKQHGTSSYLATKDGQVVVPGIQLTHFLISNDTVSFQSLNANADGATVSCKDQTAASSFNIRDIAYSIHCYTIDIMGIESVYVLAVPKEGHAIIDRNYKEKGLIVFVATMVTIFIAFFSFLYVNCRAFRREMHLCASLIKQCEATQQAEKKNMNKSTAFASASHDVRASLAGITGLIEISSELVAPGSELETNLKQMNGCTQDLLGLLNSILDTSKIEAGKMQLEEEEFDVFNLLEDVVDFYHPVAAKKGVDLVLDPCNGSVVGYSRVKGDRGKLKQVLSNLLSNAVKFTDEGHIAVRAWTRKPKLLQNSTVTFSKFGFKQYLSCLFRNKTEPRSDVESTRSIQEDPHSMDFIFEVDDTGKGIPKEKYKSVFENYVQIKDTALGQGGTGLGLGIVQSLVRLMHGDIEIVEKDTGERGTCFKFNVVLSVCENEGVSDGSRREGVGCGSGDRIIECEEQQTVQASCSGSSRICSMSPKLRMCSSSPKPEASLVVLLIVDEERQRTSRRFMERLGIKVKVVNTGKGLFYTLRKINLKAKHSSGQNSPGSSDLSHWSTPHSSLDIATRVSLSSMDGTEHMPLVFKKTDVGASPGFILVVIDANAGPFSELYTIVSNFKKDLRNPCKVVWLDKPFMRRINLKALGQDDIVTSKPFHGTRLFQTIKLLPEFGGSWQSNSSRAKREMANERATLNTCKDPGLSKYTSPLLDRSHVSSSTDESTFQTGEQILKGKRSSKAKISLVHHGETQEIGNSSGSQKPLRGKKFLVADDSAILRNIASATLISLGATVEQCENGEEAVRLVDEGLPREFPNPPYDYILMDCQMPIMDGLEATKWIRKIEKAYGVRIPIIALTAGTERITIESGMDYHMDKPINRQDLLKAIAYINGKV 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01597 1022 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 281 360 IPR036097 GO:0000155|GO:0007165
Vian3g01597 1022 MobiDBLite consensus disorder prediction 842 864 - -
Vian3g01597 1022 Gene3D - 279 359 - -
Vian3g01597 1022 MobiDBLite consensus disorder prediction 674 693 - -
Vian3g01597 1022 MobiDBLite consensus disorder prediction 842 863 - -
Vian3g01597 1022 Pfam His Kinase A (phospho-acceptor) domain 293 358 IPR003661 GO:0000155|GO:0007165
Vian3g01597 1022 SMART HKATPase_4 408 566 IPR003594 -
Vian3g01597 1022 CDD REC_hyHK_CKI1_RcsC-like 898 1015 - -
Vian3g01597 1022 SMART HisKA_10 292 358 IPR003661 GO:0000155|GO:0007165
Vian3g01597 1022 ProSiteProfiles Histidine kinase domain profile. 299 566 IPR005467 -
Vian3g01597 1022 PRINTS Bacterial sensor protein C-terminal signature 490 504 IPR004358 GO:0016310|GO:0016772
Vian3g01597 1022 PRINTS Bacterial sensor protein C-terminal signature 508 518 IPR004358 GO:0016310|GO:0016772
Vian3g01597 1022 PRINTS Bacterial sensor protein C-terminal signature 524 542 IPR004358 GO:0016310|GO:0016772
Vian3g01597 1022 CDD HisKA 290 354 IPR003661 GO:0000155|GO:0007165
Vian3g01597 1022 SMART REC_2 896 1015 IPR001789 GO:0000160
Vian3g01597 1022 SUPERFAMILY CheY-like 892 1017 IPR011006 -
Vian3g01597 1022 ProSiteProfiles Response regulatory domain profile. 897 1019 IPR001789 GO:0000160
Vian3g01597 1022 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 1016 - -
Vian3g01597 1022 Gene3D - 360 571 IPR036890 -
Vian3g01597 1022 Gene3D - 875 1019 - -
Vian3g01597 1022 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 347 561 IPR036890 -
Vian3g01597 1022 Pfam Response regulator receiver domain 899 1015 IPR001789 GO:0000160
Vian3g01597 1022 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 408 564 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01597 Vian-Chr3 17537606 17542453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01597 3 1008 Histidine Kinase Gene Family AT2G47430 41.555 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian3g01597 HATPase_c 1.7e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01597 - - var:108325233 1924.83