Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01589 ATGGGAAGCGGTCCTTTTTCCTTCACACCTTTCAAATTCAACGAATTCCTTGGCGGTTATGGCTCAATACAAGGAGAGGATGTTGTGCTCCAAAGGGAGCACACTTTCTCTTCAACAACGGAGCAACTAACAGGGATAGATACTCACGTAGATCAAACTCAAAAGCAGCAACGTAGTTTCGATTTTGATCACGTGATGACAGAGGAGTTCAACTTAGAATCTGTTCAGCCACCAAAGAAGTCTTCTTTTCAAGAAACTAAGGGACAAAAGGATAAACAAGTGCTGCCATCTTCTCTAGCATCATTACAGCTCCTGAGAAATTATGGAAGCAGGTTCAATAAGCTAGGGACGCAAAACATCAGGTGTAGTGTTGAAACTTGCTTTAGTCCTCAGAAATTATCAACTGAAGAAATAATAAGATTGGCCGGAGCAAGGTATCTTCAACACTCTACACAGTGGCATCATGATATTTGCATCCCCGTGCACCCTTATGGAATGAGCCTTCAGGTTTTATCGGAAGAAGAAAATAGAGGTGTGGAGCTCGCTCAGTTTCTTCTGGCAGCTGTTGATAGGGTAGGCTGCCAGCAATTTGAACGTGCCAGCATGCTACTTTCCCATTTGCTGTGGAACTCCTCAGGTGGTGGTGGAAGCCCCGTTCAGAGAGTTGTCTTTCATTTCTCTCAAGCACTTCTTGAAAGAATCAAAAGAGAAACGAGAGGAAAAGTGACATTGAACAAGTGTGAAAAAAACAAGGAAAGGGAAATGATTGAGAAGCTAAGATTGGATACTAACATGGCTGTTACGTGCCATGAAAAAATTCCTTTCAATCAAGTAATGCAGTTTGCTGGAGTGCAAGCAATTGTGGAACATGTGGCATTTCAAACCAGAATCCATCTCATAAACCTTGATATTGGATGTGGGGTGCAATGCACAGCTTTGATGCAAGCACTGGTTGAGAGGCATGAAAGGCAAGTTGAGCTTCTGAAGATAACTGCCATTGGACTTCAAGGTAAGACCAGACTGGAAGAAACAGGAAAAAGGTTAGTGAGTTTTGCTGAATCCTTGAACTTGCCCTTTTTATATAAGATAGTTTTCGTCAGAAGCATCACAGAGATCAAGGCTGAGCAATTTGGAATTGAAGATGACGAAGCTGTAGCTGTTTATTGTCCTTATATGCTGAGGACGATGGTGTCGGATTTTGTCTCTTTGGAACACTTGATGCGGGTGATGACAAAAATCAGACCAACTATAATGATAGTTCTTGAGTTGGAAGCAAAGCACAATTCACCCTCCTTTGTGAATCGCTTCATTGAAGCATTTTTCTTCTATGCAGCATATTTTGACTGCATTTACACCTGCATGAAGCAGGATTATGAGTGCAGAATGCGAATTGAGGGAATATTATCAGAAGGGATACGGAACATTGTTGCTATGGAAGATGGAGAAAGAAAGGTTAGAGATGTAAAGATAGATGTTTGGAGAAGATTCTTTGCAAGGTATAGAATGGTGGAGACTACATTTAGCGATTCATCATTGTACCAAGCTAACTTGGTTACAAAAAAATTTGAGTGTGGGAATTTCTGCACTGTGGAAAGAAACGGGAAATGCCTAATAATTGGATGGAAAGGAACCACAATTCATTCAATCTCAGCTTGGAAGTTTCTTTAA 1668 0.4113 MGSGPFSFTPFKFNEFLGGYGSIQGEDVVLQREHTFSSTTEQLTGIDTHVDQTQKQQRSFDFDHVMTEEFNLESVQPPKKSSFQETKGQKDKQVLPSSLASLQLLRNYGSRFNKLGTQNIRCSVETCFSPQKLSTEEIIRLAGARYLQHSTQWHHDICIPVHPYGMSLQVLSEEENRGVELAQFLLAAVDRVGCQQFERASMLLSHLLWNSSGGGGSPVQRVVFHFSQALLERIKRETRGKVTLNKCEKNKEREMIEKLRLDTNMAVTCHEKIPFNQVMQFAGVQAIVEHVAFQTRIHLINLDIGCGVQCTALMQALVERHERQVELLKITAIGLQGKTRLEETGKRLVSFAESLNLPFLYKIVFVRSITEIKAEQFGIEDDEAVAVYCPYMLRTMVSDFVSLEHLMRVMTKIRPTIMIVLELEAKHNSPSFVNRFIEAFFFYAAYFDCIYTCMKQDYECRMRIEGILSEGIRNIVAMEDGERKVRDVKIDVWRRFFARYRMVETTFSDSSLYQANLVTKKFECGNFCTVERNGKCLIIGWKGTTIHSISAWKFL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01589 555 ProSiteProfiles GRAS family profile. 172 553 IPR005202 -
Vian3g01589 555 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 137 543 IPR005202 -
Vian3g01589 555 Pfam GRAS domain family 182 553 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01589 Vian-Chr3 17439895 17441562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01589 167 554 GRAS Transcription Factor Family AT1G66350 27.692 4.29e-40 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian3g01589 GRAS 7e-75 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01589 - - gmx:100791952 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01589 3 17439895 17441562 Vian3g01589 3 17439895 17441562 ECH