Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01578 ATGGAGAAGAAGGAGATGGTTGTGAAGACTGAGGATGCGGTTGGGTCCTCTTCCTTCCCTTGTTATAATTCAAACGTTTATCCATTCTCGAACACCTTTGATTTCTCTGAGGTGGAAAAGAGCTCTTTAGGGTTTATGGAGCTACTGGGTGTGCAGGATTACAGTCCTCTGCTTGAGTTGCCTCAACTTTCAACCGTTTCTGTGCCTCATCACTCTACAGTTAAGGCTCCACCTGATAACGGAAAAGAGTGTTCCGAGGTGTTGAACCACCAACCCGCCACTCCGAACTCTTCTTCTATTTCATCTGCATCCAGTGATGCTGTCAATGATGAACAGAATAAGACTCTAGACCAAGTTGAAGAAGATGACGATGAAGAAGAAGAAGGAAAACAAAAGACTAAGAAACAGTTGAAGCCCAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGGAGGAAGTACGGTCAAAAGGCCGTGAAAAACAGCCCTTTTCCCAGGAGTTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGCGTGGAACGATCTTTCACTGATCCAAGCGTGGTAGTCACAACCTACGAAGGCCAACACACACATCCAAGCCCAGTTATGCCTCGCTCAGGCGTCCCCGCTGGATACGCTACCAACTTTACTTCAGTTTTTCCACAAGCAGGAAACTACTTATCCCACTATCAGCAGCAGCACCAACAGCAACAACTTATTTTCAACACATTGTCCTCTTTGGGTTTCCCTTACAATGATTCTTCCACTCCAAAGAACGCGGGTTTTACTCAAGAGAGACGGCTTTGTAATCCGGGGACGAATGCATTTCTAAGGGACCATGGACTTCTTCAAGATGTTGTTCCCTCACACATGTTGAAAGAAGAGTAG 954 0.4549 MEKKEMVVKTEDAVGSSSFPCYNSNVYPFSNTFDFSEVEKSSLGFMELLGVQDYSPLLELPQLSTVSVPHHSTVKAPPDNGKECSEVLNHQPATPNSSSISSASSDAVNDEQNKTLDQVEEDDDEEEEGKQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRSGVPAGYATNFTSVFPQAGNYLSHYQQQHQQQQLIFNTLSSLGFPYNDSSTPKNAGFTQERRLCNPGTNAFLRDHGLLQDVVPSHMLKEE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01578 317 Pfam WRKY DNA -binding domain 164 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01578 317 MobiDBLite consensus disorder prediction 87 112 - -
Vian3g01578 317 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01578 317 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 256 IPR044810 GO:0003700
Vian3g01578 317 MobiDBLite consensus disorder prediction 69 152 - -
Vian3g01578 317 SUPERFAMILY WRKY DNA-binding domain 155 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g01578 317 PIRSF WRKY_txn_fact_IIc 1 317 IPR017396 GO:0003700
Vian3g01578 317 FunFam WRKY transcription factor 57 149 223 - -
Vian3g01578 317 Coils Coil 116 136 - -
Vian3g01578 317 Gene3D WRKY domain 148 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g01578 317 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01578 Vian-Chr3 17343084 17344764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01578 34 317 WRKY Transcription Factor Family AT2G47260 47.230 1.77e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian3g01578 WRKY 2.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01578 - - gmx:100784158 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01578 3 17343084 17344764 Vian3g01578 3 17343084 17344764 ECH
Vian2g02814 2 49058745 49060100 Vian3g01578 3 17343084 17344764 PCT