Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01567 ATGGTTTCCAAAACCCACTCCCAACTCATTATTGTATTTCTGTTTCTTCTTTCTTCCCTAAACATTACTTCCACCTCGTACACACATGATGCAGTCAATTTTGACAAGTGGGTATCTCGAAATGTGAAAAAGTACGAGGAGAGAAAGAGCATTTTGAAAACCAAAGTGAAGGTGGCTGCTCCTGGTCCAGATTTGAAGCTGAGGGACGCTGAGAGTAACAAAGCTATCATAACAGTAAGACAAGACGGTTCTGGTGATTTCAAAACCATTTCAGAAGCTCTCAATAGCATTCCACCACGTAACACTAGGAGAGTTATAGTGTCCATTTCTCCGGGTGTTTATAGAGAGAAGGTGATGATCCCAAGAACAAAGGCTTTTGTTACATTGTCAGGGAACGCAGGGAATCCTCCAACCATTACTGGAAATGATACAGCATCTGCCTCCGGAAGAAATGGCACTCCCTTAGGGACGTTCCAGAGTGCAACTGTTGCTGTGGATGCTAGCTACTTTGTGGCCATCAACATCAAATTTGAGAATTGCTATCTAAATTCCACAACTACGAAGGTGGCTTCCATCACTGCTCAAAAGCGTTCAAATTCGTCATTGGAGAGTGGATTCTCCTTCAAAAACTGCACAGTAACCGGTAGTGGACATGTTTATCTAGGAAGAGCATGGGGCGATTATTCCAGAGTTGTTTTCTCTTACACCTACATGGACAACCTAGTACTCCCCAAAGGATGGAGTGATTGGGGTGACCAAAACCGTGATTCGAGGGTATATTATGGAGAATACATGTGTAGTGGACCAGGAGCTAACTTGGCAGGAAGAGTGCCATGGGCACGAATGCTTACCGATGAAGAGGCCAAGCCATTTATTGGGACCCAATTCATTGAAGGGGACACTTGGCTCATTAACACGAGCTGA 924 0.4426 MVSKTHSQLIIVFLFLLSSLNITSTSYTHDAVNFDKWVSRNVKKYEERKSILKTKVKVAAPGPDLKLRDAESNKAIITVRQDGSGDFKTISEALNSIPPRNTRRVIVSISPGVYREKVMIPRTKAFVTLSGNAGNPPTITGNDTASASGRNGTPLGTFQSATVAVDASYFVAINIKFENCYLNSTTTKVASITAQKRSNSSLESGFSFKNCTVTGSGHVYLGRAWGDYSRVVFSYTYMDNLVLPKGWSDWGDQNRDSRVYYGEYMCSGPGANLAGRVPWARMLTDEEAKPFIGTQFIEGDTWLINTS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01567 307 Gene3D - 177 307 IPR012334 -
Vian3g01567 307 SUPERFAMILY Pectin lyase-like 74 303 IPR011050 -
Vian3g01567 307 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 177 303 - -
Vian3g01567 307 Pfam Pectinesterase 77 180 IPR000070 GO:0030599|GO:0042545
Vian3g01567 307 Pfam Pectinesterase 186 300 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01567 Vian-Chr3 17150258 17155349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01567 7 304 Carbohydrate Esterase AT5G07430 30.303 1.01e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01567 K01051 - pop:7455411 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01567 3 17150258 17155349 Vian3g01567 3 17150258 17155349 ECH
Vian2g02420 2 44670592 44673744 Vian3g01567 3 17150258 17155349 PCT