Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01566 ATGACAAGCTTATCAGATAGTCAATTATCTGCTACATATGGAAGTGAAGAAGAATTCGCAATTAAGAAAGGATCATGGACTGAGGAAGAAGATTCTCTTCTGATCAACTATGTCAACCTCCACGGCGAAGGCCACTGGAATTCCCTCGCTCGCTCTGCTGGTCTAAAGCGAACGGGTAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATCACTCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCGCTGGGGCAACCGGTGGGCTAAAATAGCAGAACAGTTGCCTGGGAGAACAGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGTTGAAGCAAGCCAAGCAACTCAAATGTGATGTGAACAGCAAGCAGTTTAGGGATGCTGTGCGTTTTGTTTGGATGCCACGCCTTATGGAGCGGATTCAGGCTTCTTCTGGGAATGTTTATTCTTCCTATGGACATGGTCAAACCACATTGTGCAACACTCAAACCCACGGTGAATCTAGTGGGGTCAATCCCATGATGTTTTCTGAAAGCTCAATGATTTCCTCGTACTCTTCAGGGGTTGATGTTCAGCCTCCTTCTCTCTCTGATGCGAGTACAACTTCATCTTGCAATTTAATGGGAGATGGTAGCTGTTCATCGGAAAGTGTTGAAAAGGGTTGGCAGCAGTGGGACTACTCTGATCTCCAAGCATTTGAACCGAACCATGGTTTTGGTGATGCAGACTTGTGGACCGATGAAAATATGTGGTTTTTGCAGCAGCATCTTGCTGATGATTTTTGA 822 0.4513 MTSLSDSQLSATYGSEEEFAIKKGSWTEEEDSLLINYVNLHGEGHWNSLARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNRWAKIAEQLPGRTDNEIKNYWRTRVLKQAKQLKCDVNSKQFRDAVRFVWMPRLMERIQASSGNVYSSYGHGQTTLCNTQTHGESSGVNPMMFSESSMISSYSSGVDVQPPSLSDASTTSSCNLMGDGSCSSESVEKGWQQWDYSDLQAFEPNHGFGDADLWTDENMWFLQQHLADDF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01566 273 Gene3D - 80 121 - -
Vian3g01566 273 Gene3D - 20 76 - -
Vian3g01566 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Vian3g01566 273 FunFam Myb transcription factor 23 75 - -
Vian3g01566 273 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Vian3g01566 273 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Vian3g01566 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Vian3g01566 273 FunFam MYB transcription factor 80 143 - -
Vian3g01566 273 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Vian3g01566 273 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 198 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vian3g01566 273 SMART sant 22 72 IPR001005 -
Vian3g01566 273 SMART sant 75 123 IPR001005 -
Vian3g01566 273 CDD SANT 25 70 IPR001005 -
Vian3g01566 273 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Vian3g01566 273 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01566 Vian-Chr3 17143734 17144767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01566 16 272 MYB Transcription Factor Family AT2G47190 49.049 2.69e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g01566 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01566 K09422 - gmx:778040 408.297