Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01565 ATGGATACTAACTGTGGGCCCCTATTAAATACACAACCCAAGATGCAGCATGGTGAAAACGAGATGTTAGGCCTCAGAAAAGGTCCATGGACGGTTGACGAGGACACCATTCTGGTCAATTACATCACCACCCATGGTGAAGGTCACTGGAATTCCGTCGCACGATGTGCAGGTTTAAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTGAACTACTTGCGCCCCGATGTGCGGCGTGGAAACATCACACTCCAAGAACAAATACTAATTCTCGACCTTCACTCTCGCTGGGGCAACAGGTATAAAATTCAATCTACGGTTTTTCTGTTATGTTTTTCTGTTATGTGGTTGGGCGTGGGCACGTGTAATATATGGTGTATAATGTTTTTTCGTAGGTGGTCGAAGATTGCACAGCACCTGCCAGGAAGAACGGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGATAAAACAGGCGAAGCAACTCAGGTGCGATGTCAACAGCAAAGAGTTCAGAGACACCTTGCGTTATGTGTGGATGCCGCGCTTACTGGAACGGCTTCAGCCCACATCGGAAATTCTCCAGCCTCAGATGAAACTGGACCCAGGCCCAACTGAAATTCAGGGCTTTCACGGTTTAGATTCGGTGACGGAGTGGAGTAAAGGGAGCCACCCCGCCGGTTCTTATTCTTATTCGGACTCATCATCCGTGGAGCTCCAAGTTCATTCGAATTCAGACCATAGCGATTGTTCGGGTTCGGGTCTGGATCCGTGGGGGAGTTTGAATATGCAGATGTGGGAAGAAGGGAATGGTGGGGGTGAATCGTTGGAAAGTTTGTGGAATGAGCTCGAAATAAAATACAGTTCCCTTCCGTGA 882 0.4796 MDTNCGPLLNTQPKMQHGENEMLGLRKGPWTVDEDTILVNYITTHGEGHWNSVARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRYKIQSTVFLLCFSVMWLGVGTCNIWCIMFFRRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLRCDVNSKEFRDTLRYVWMPRLLERLQPTSEILQPQMKLDPGPTEIQGFHGLDSVTEWSKGSHPAGSYSYSDSSSVELQVHSNSDHSDCSGSGLDPWGSLNMQMWEEGNGGGESLESLWNELEIKYSSLP 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01565 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 161 IPR017930 -
Vian3g01565 293 CDD SANT 131 155 IPR001005 -
Vian3g01565 293 FunFam Myb transcription factor 27 79 - -
Vian3g01565 293 ProSiteProfiles Myb-like domain profile. 75 157 IPR001005 -
Vian3g01565 293 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Vian3g01565 293 Pfam Myb-like DNA-binding domain 80 155 IPR001005 -
Vian3g01565 293 Gene3D - 27 79 - -
Vian3g01565 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 78 IPR017930 -
Vian3g01565 293 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 243 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vian3g01565 293 SUPERFAMILY Homeodomain-like 27 155 IPR009057 -
Vian3g01565 293 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Vian3g01565 293 Gene3D - 84 157 - -
Vian3g01565 293 CDD SANT 29 74 IPR001005 -
Vian3g01565 293 SMART sant 79 159 IPR001005 -
Vian3g01565 293 SMART sant 26 76 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01565 Vian-Chr3 17119624 17120601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01565 3 195 MYB Transcription Factor Family AT1G48000 54.639 5.49e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g01565 Myb_DNA-binding 6.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01565 K09422 - gmx:778065 295.819