Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01560 ATGTTGGTGGGGACTGACAAACGCGTCAGCACCTATGAACACAAGATGACAGTTATATTACTCGGTCGGCGCTATCAGAGTTTCCCATATTACCCCTCTCCCAACCGTAGCCAACCCACAAGTCACACGTCAACCTGTAAAACCGTCACGTGTCGGTTAAGCCAAGCCTCAACGCGTGCGAGGCAAACACGCTTGTGGTCCCAGAAACTCCACATGTCCGTGAAGCCAGCGAGGAAGTTTTTGATCACCAATCCCAACGGAAACCGCGAGAAAAATCCCCAGAAATCTCAACAGAAGAGAAAAAAATCGAAACAGTTTTGTAACATCAATCAAGTATTTTGGGAACATAGCACAATAGTTTTCAGCTCTATACAACGTCGGATTCGGATTTGGATCAGTTTTCCCGTGAGAAGTTTAGAGGTGGAAAAAGAGAAAGCACAGAACATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAGAACGTGGGTGTGTTGGATGTGAAACATTTTCAAAACAAGGGAAGCGATGTCCCCGAGATCGGAGATGCAGATACTAATTTGCCTCCGAGTTTTGACAGAGTTCGTGTCACTGAGTTGGTCTCCGCCGAGTTACTCACTTCACAAGAAGATGCTAAGTCTGCAGACAGGATATCGGATGCTGCTCTTGAATCTGCGGTTCTGCAGTTTATACCTTCCCTCCGTTCAGGTAGTTTTGCTGACATTGGGCCAAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCATCTCATATGGGATCACCATACAACTTTCCCAGACCAAGTGCTTTTTATGGGGTGTTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATATTAGAAAAAACGTCATAAAGTTCTTCTTCGAAGATGTCAGTTTCCCACAGACTTCTGAAGTCAATAGTGTATTTCTGGAAGAGGTAGAGGATTCCCTCAGAAAGGCGTTTCTTTTGGCTGATTCAGCTTTGGCCGATGATTGCAGTGTGAATAGTTCATCAGGCACCACGGCCCTCACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGCGACTGCCGAGCAGTTCTGTGTCGCAAAGGAGAGGCCATTGACATGTCTCAAGATCACAGGCCTATTTATCCATCAGAACGGAGGCGTGTTGAAGAATTGGGTGGCTACATAGATGATGGTTATCTCAATGGGGTTTTATCAGTTACCCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGGTCCCTCACCTTTGATTGCAGAACCGGAGTTCCGGCAAGTTGTTCTAACAGAGGATGATGAATTCCTCATCATAGGATGCGATGGCATATGGGATGTCATGTCAAGTCAGCATGCAGTTAGCCTTGTTCGCAGAGGCCTGAGGAGGCACGACGATCCTGAAAAATGTGCCAGGGACCTGGTTATGGAGGCACTACGCCTGAACACATTTGATAATCTCACTGTGATCATTGTATGTTTTTCTTCCCTCGACCACATGGAGCCAGAGCCATCCCCTCCTCGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCTAGCAACTGA 1635 0.4709 MLVGTDKRVSTYEHKMTVILLGRRYQSFPYYPSPNRSQPTSHTSTCKTVTCRLSQASTRARQTRLWSQKLHMSVKPARKFLITNPNGNREKNPQKSQQKRKKSKQFCNINQVFWEHSTIVFSSIQRRIRIWISFPVRSLEVEKEKAQNMVAEAEVVCQQNVGVLDVKHFQNKGSDVPEIGDADTNLPPSFDRVRVTELVSAELLTSQEDAKSADRISDAALESAVLQFIPSLRSGSFADIGPRRYMEDEHIRIDDLSSHMGSPYNFPRPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVSFPQTSEVNSVFLEEVEDSLRKAFLLADSALADDCSVNSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPSERRRVEELGGYIDDGYLNGVLSVTRALGDWDMKLPKGGPSPLIAEPEFRQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRRGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDHMEPEPSPPRQRKLRCCSLSAEALCSLRSLLEGSASN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01560 544 ProSitePatterns PPM-type phosphatase domain signature. 272 280 IPR000222 GO:0043169
Vian3g01560 544 CDD PP2Cc 233 503 IPR001932 -
Vian3g01560 544 Gene3D - 216 509 IPR036457 -
Vian3g01560 544 PANTHER PROTEIN PHOSPHATASE 2C 168 501 IPR015655 GO:0004722|GO:0006470
Vian3g01560 544 FunFam Probable protein phosphatase 2C 22 217 506 - -
Vian3g01560 544 SUPERFAMILY PP2C-like 227 505 IPR036457 -
Vian3g01560 544 SMART PP2C_4 223 501 IPR001932 -
Vian3g01560 544 MobiDBLite consensus disorder prediction 80 101 - -
Vian3g01560 544 ProSiteProfiles PPM-type phosphatase domain profile. 233 503 IPR001932 -
Vian3g01560 544 Pfam Protein phosphatase 2C 243 495 IPR001932 -
Vian3g01560 544 Coils Coil 136 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01560 Vian-Chr3 17013468 17016497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01560 246 540 PP2C-type Phosphatase Gene Family AT3G62260 71.622 9.93e-155 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01560 K14803 - gmx:100819791 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01560 3 17013468 17016497 Vian3g01560 3 17013468 17016497 ECH