Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01550 ATGGCGAATGGAAAGGTGCTTATCTCTAGTGTTTCCCTGATTCTCGTGGTGGGTGTTGCCATCGGTGTTGTGGTCGTGGTTAACAAAAGTGACTCATCATCTGATCCTAAAGTAGCTGCTCAACAAAAGAACGTGAAGGTAATGTGCGAAGGCACCGAAGACCCTAAGCTTTGTCACGAAACTATGAGCACTGTGAAAGGTAACACCTCAGACCCAAAGGTTTACATAGCAGCAGGAGTGGAAGCAACGATGCAGAGAGTGATCCAAGCTTTGAACATGAGTGATAGGCTGAAAGTGGAGCATGGAGACAAGGATCCCGGCATAAAAATGGCCCTTGATGATTGTAAAGACTTGATCCAATTCGCGTTGGATAGCATCGAGTCCTCGGTTAACTTGGTCCGCGACCAGAACATTCAAGCCATGTATGACCAAACCCCAGACTTCAGGAACTGGTTGAGTTCTATAATCTCGTACCAGGATACGTGCATGGACGGGTTAAACAACGGCACAAACGGTGAGAAAGAAATTAAGGAAAAATTAAACACAGATAGTTTGGACGAAATGGGAAAGATGACGGGCATAGTCCTTGACATTGTGACAAACTTGTCCAATATCCTTGAGAAATTTGACTTGAAGTTGAATTTGAGACCTGCTTCTCGGCGTCTTCTAGAGTTGGACGATGAAGGGTTACCTACGTGGTTCTCTGGTGCAGATCGGAAGCTCCTTGCTGCCGTGGATAAAGGCACAGCTGGGGCACCCAACGCAGTGGTTGCGAAGGATGGCAGTGGAAAATTCAAAACCGTTAAGGAAGCTATTGATTCCTACCCTAATGGCAACACGGGCAGATTTGTTATTTACGTTAAGGCTGGGATCTATGATGAGTACATCCTCATTCCTAAGAAGTCATCCAATATTCTCATTTATGGTGATGGCCCTGCAAAGACCATTATTACCGGTCACAAGAACTTTGTAGATGGCGTCAAGACAATGCAAACTGCTACCTTCGGAAGGATAAAGTGGAAGGGTTACCAAGGAATTATTACTAAGACCGATGCTGAAAAATTCACTGTTGGCCAATTCCTGAAAGGTGGAACTACTGGGAATGCTGACGATTGGTTGAAGGCTACTGGGGTTCCTTACGCCGTTGGATTCCTCAAATCTTGA 1164 0.4545 MANGKVLISSVSLILVVGVAIGVVVVVNKSDSSSDPKVAAQQKNVKVMCEGTEDPKLCHETMSTVKGNTSDPKVYIAAGVEATMQRVIQALNMSDRLKVEHGDKDPGIKMALDDCKDLIQFALDSIESSVNLVRDQNIQAMYDQTPDFRNWLSSIISYQDTCMDGLNNGTNGEKEIKEKLNTDSLDEMGKMTGIVLDIVTNLSNILEKFDLKLNLRPASRRLLELDDEGLPTWFSGADRKLLAAVDKGTAGAPNAVVAKDGSGKFKTVKEAIDSYPNGNTGRFVIYVKAGIYDEYILIPKKSSNILIYGDGPAKTIITGHKNFVDGVKTMQTATFGRIKWKGYQGIITKTDAEKFTVGQFLKGGTTGNADDWLKATGVPYAVGFLKS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01550 387 SUPERFAMILY Pectin lyase-like 249 335 IPR011050 -
Vian3g01550 387 FunFam Pectinesterase 41 203 - -
Vian3g01550 387 ProSitePatterns Pectinesterase signature 1. 279 298 IPR018040 -
Vian3g01550 387 Gene3D - 250 336 IPR012334 -
Vian3g01550 387 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 204 IPR035513 -
Vian3g01550 387 Pfam Pectinesterase 254 336 IPR000070 GO:0030599|GO:0042545
Vian3g01550 387 Pfam Plant invertase/pectin methylesterase inhibitor 45 198 IPR006501 GO:0004857
Vian3g01550 387 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 203 IPR035513 -
Vian3g01550 387 PANTHER PECTINESTERASE 19 335 - -
Vian3g01550 387 SMART PMEI_2 40 198 IPR006501 GO:0004857
Vian3g01550 387 NCBIfam pectinesterase inhibitor domain 23 202 IPR006501 GO:0004857
Vian3g01550 387 CDD PMEI-like_3 48 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01550 Vian-Chr3 16940209 16942033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01550 6 334 Carbohydrate Esterase AT3G05610 36.036 3.69e-54 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01550 K01051 - gmx:100789650 496.508