Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01549 ATGGCCGGAAAAGTACTCGCTCCCGCAATTTCGCTCGTCCTTGTGGTGGGTGTGGTCATTGGCGTGGTTGCTATAGTTCAGAGCCCCAAGGCAGAGACGAATAGCTCAGGAAACCTGAAAACCACGAACAGGGCTGTGACAGCGTTGTGCCAAGACTCAGACGACCCAAAACTCTGCCACAATGTGCTTTCCTCCGCAAACAGCTCAGACCCTAAAGATTACATTGTCACCGTGGTGAAAACCTCGATGGACAGTGTCATAAAAGCGTTCAACATGAGCGACAAGCTCACAGTGGAGCACGGCAACAGCAGCCAGGGAATGAAGATGGCTCTCGATGATTGCAAGGATTTGTTGGAAGCCGCGATGCACGATCTCGAAGCCTCAGGTGTGTTGGTCAAAGAGAGCAACATCGAGGACGTTACCGACCGCAGTGCCGAACTCAAAAACTGGTTAGGTGCTGTGGTGGCCTACCAGCAATCTTGCCTGGACGGCTTCAACACCGACGGCGAGAAGAAGGTCCAGGAACAGTTGCAGTCCGGTAGTTTGGACAACGTTGGAAAGCTCACTGGATTGGCACTTGATGTCGTGTCGGGGATTTCAAAGGTTCTTCAATCCTTGGACTTGAACTTGTCCTTGAAACCCGCCTCTCGTCGCCTTCTGGATGTTGATCAAGATGGGTACCCCACTTGGCTCTCCGCCGCTGATCGCAAGCTCTTGTCTCAAGATGGAGTTCTGCCCCATGCTACAGTGGCTAAGGATGGCAGCGGCCAATTCAAAAGCATTACTGACGCCATCAACTCCTACCCCAAGAATCACCAAGGAAGATTCATCATCTACGTCAAGGCTGGTATCTATGACGAGTACATCCTTGTTGACAAGAAGAAGTTGAACCTTCTCATCTATGGCGATGGCCCCACCAAGACCATCATCACCGGACGCAAAAACTTCGCCGAGGGTACCAAGACAATGAGAACGGCCACCTTCTCTACTGAGCCGAACACCCAAGACTGCTACTTCGCTGAGTTTGGCAACAGTGGACCTGGTTCCGTTGCTAACGCAAGGGCACCCTTCAGCAAAGGTCTCATCAGCAAGGATGAGGCTGCGAAATTCACTGCTGAGCCCTGGCTCCAAGCTAGCACCTGGTTGCCTGCCACTGGCATTCCTTTTGACGCCGGCTTCACCAAAGCTTAA 1191 0.5231 MAGKVLAPAISLVLVVGVVIGVVAIVQSPKAETNSSGNLKTTNRAVTALCQDSDDPKLCHNVLSSANSSDPKDYIVTVVKTSMDSVIKAFNMSDKLTVEHGNSSQGMKMALDDCKDLLEAAMHDLEASGVLVKESNIEDVTDRSAELKNWLGAVVAYQQSCLDGFNTDGEKKVQEQLQSGSLDNVGKLTGLALDVVSGISKVLQSLDLNLSLKPASRRLLDVDQDGYPTWLSAADRKLLSQDGVLPHATVAKDGSGQFKSITDAINSYPKNHQGRFIIYVKAGIYDEYILVDKKKLNLLIYGDGPTKTIITGRKNFAEGTKTMRTATFSTEPNTQDCYFAEFGNSGPGSVANARAPFSKGLISKDEAAKFTAEPWLQASTWLPATGIPFDAGFTKA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01549 396 Pfam Plant invertase/pectin methylesterase inhibitor 45 194 IPR006501 GO:0004857
Vian3g01549 396 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 201 IPR035513 -
Vian3g01549 396 NCBIfam pectinesterase inhibitor domain 18 176 IPR006501 GO:0004857
Vian3g01549 396 SMART PMEI_2 41 195 IPR006501 GO:0004857
Vian3g01549 396 SUPERFAMILY Pectin lyase-like 247 331 IPR011050 -
Vian3g01549 396 CDD PMEI-like_3 48 201 - -
Vian3g01549 396 SUPERFAMILY Pectin lyase-like 329 391 IPR011050 -
Vian3g01549 396 Pfam Pectinesterase 248 331 IPR000070 GO:0030599|GO:0042545
Vian3g01549 396 PANTHER PECTINESTERASE 19 331 - -
Vian3g01549 396 Gene3D - 244 331 IPR012334 -
Vian3g01549 396 Gene3D - 332 395 IPR012334 -
Vian3g01549 396 FunFam Pectinesterase 42 200 - -
Vian3g01549 396 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 197 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01549 Vian-Chr3 16930030 16931816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01549 335 393 Carbohydrate Esterase AT2G47030 33.898 5.75e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01549 K01051 - gmx:100808559 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01549 3 16930030 16931816 Vian3g01549 3 16930030 16931816 ECH