Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01546 ATGAAAAAAAGAAAAGAATTTGGTTCAGTGTGTGGTCTGAAGGTTTTGAAGAGCAAAGACGAGCACCTGGATCCTGAAACTGTCTCCGCGCGCTCCTCCATTGATCTCCGCAGCAGCGTCTCTGAATACGTTTCCGATTACGACGACGAAATCACAGCCTCCGAGGATGACTTCCGCATCTCCGAGACCGAGCGTGTGTCAATGCTCGCCATGGAGGATTTGAAAGCCATTGCGGATTGCATGATTTCCTCGGGCTACGGGAAAGACCTCGCTCGGGTTCAGAAACTGGACTGGCAGGTTCTCGAGTTGAAGATCAAGAAATGGTTGAACGCTGTTAAAGTCGCCGTTGGAACTCTCTTCCACGGCGAGAGAATCCTCGCTGACCACGTCTTCTCCTCGAATCCCGAAAAGAGGATCTCCAAATCCTGGTTCGCTGAAATCACCAATCCTGAAGAAGATGAAATCCAACCTTTTGCAATTCACCTCCAATTTTCTTTTCAGCTGAAATGA 510 0.4882 MKKRKEFGSVCGLKVLKSKDEHLDPETVSARSSIDLRSSVSEYVSDYDDEITASEDDFRISETERVSMLAMEDLKAIADCMISSGYGKDLARVQKLDWQVLELKIKKWLNAVKVAVGTLFHGERILADHVFSSNPEKRISKSWFAEITNPEEDEIQPFAIHLQFSFQLK 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01546 169 SUPERFAMILY Cullin repeat-like 60 153 IPR016159 -
Vian3g01546 169 Gene3D Exocyst complex component Exo70 13 160 - -
Vian3g01546 169 PANTHER EXOCYST COMPLEX PROTEIN EXO70 91 149 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01546 Vian-Chr3 16905944 16906986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01546 1 148 EXO70 exocyst subunit family AT3G09520 41.143 4.23e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01546 K07195 - gmx:100810579 190.274