Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01535 ATGGAAAACCACCGCCAAATGCAACAGCACCGTCGTCAAATCACCTTACTTGGATCGACCAATCTCGATCTAGATTCTACAACCGTCAACACCGTCAAAGAACTCGATTTTTTCTCATCAACTTCACCGTCCAACCACACTCATACCGATAACCTCCATCATCTCCCTTCAAACATTCCTAAAGACAACGGACCACTACCTCTTTTCACTGATCAGTTCGTAAATACCACTCTGAATTTAATGTGTCCGAGTCAGAGTGACGAACTGTCAAGATCAGCAGCAATTGATCAAAATCTTAAATCTCCGCTGAATACGCTCCAAAAGGAGTTTCTAAGACTGCAAGAAGAGAACTACAGGTTGAGAACGATGTTGGACCAAGTCACCCAAAACTACCACCATCTTCAATTTTTCATTGCTATGCAGAAGCAAAAGCCGTATCAGAAGGTGGAGAAAAAGGAGATGATGTCTGTTCATCATTTAATGGACCCACAATCATGCACCAAATTGGACGCTAAAGTTGTTGCATCAGTCTCCGATGATAAATCTAGTCAAGAGGCTCATCCTGATCGTGTAGAAGATGTTATTGAACAATCATCATCCAAGAGTCCCAAGTTTGAAGAATCCAAGCCCGGTGAGCCTCCTTTAAGAAGAACCAGAGTTTCCGTGCGTGCAAGATCAGAAGCTCCAGTGATTTGCGATGGATGTCAATGGAGGAAATATGGGCAAAAAATATCCAAGGGTAATCCATGTCCTCGTGCCTACTATCGTTGCACCATGGCACTAGGATGTCCGGTTCGTAAACAGGTGCAAAGATGTACAGAGGACAAGAGTGTGTTGATAACAACTTACGAAGGCAATCATAACCACCCTCTTCCACCTTCAGCCACGGTGATGGCGAATTCTACCTCAGCAGCTGCAACTATGTTCTTATCTTCTTCAGGTTCAATAACAAGTAACGAAGCACTAAACAACAGTGTAGGAGTATTCTCTTCCATGTACCTCTCAGCCTCTGCACCATTTCCCACTATCACCCTTGACATGACCAACAACAACCCTATGCAACTGCACCGGGACACCTCCTCTTTTCCATTGCATGCAACTACTTTTCCTCAGCTACCAGGCCACCCTATCATCTTCCCTCACAAATTGCAACATTCATTAGGGCAAAAACAACCTTCGTTTATTACAGATATCATGACTGCAGCTGTTGCTTCCAATCCAAATTTCACTGTAGCGTTAGCAGCAGCTATCTCGTCAATTATTGGAGCTCCTAGAAGTAATGATGCAAATAATATCTACAGTAACAATGGTGGAAATGTTCTTGCTCTTGGGACATCTATGTTGCCTGGATCCACTTAA 1359 0.4349 MENHRQMQQHRRQITLLGSTNLDLDSTTVNTVKELDFFSSTSPSNHTHTDNLHHLPSNIPKDNGPLPLFTDQFVNTTLNLMCPSQSDELSRSAAIDQNLKSPLNTLQKEFLRLQEENYRLRTMLDQVTQNYHHLQFFIAMQKQKPYQKVEKKEMMSVHHLMDPQSCTKLDAKVVASVSDDKSSQEAHPDRVEDVIEQSSSKSPKFEESKPGEPPLRRTRVSVRARSEAPVICDGCQWRKYGQKISKGNPCPRAYYRCTMALGCPVRKQVQRCTEDKSVLITTYEGNHNHPLPPSATVMANSTSAAATMFLSSSGSITSNEALNNSVGVFSSMYLSASAPFPTITLDMTNNNPMQLHRDTSSFPLHATTFPQLPGHPIIFPHKLQHSLGQKQPSFITDIMTAAVASNPNFTVALAAAISSIIGAPRSNDANNIYSNNGGNVLALGTSMLPGST 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01535 452 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 93 430 IPR044810 GO:0003700
Vian3g01535 452 MobiDBLite consensus disorder prediction 177 221 - -
Vian3g01535 452 Gene3D WRKY domain 216 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g01535 452 SMART WRKY_cls 231 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01535 452 ProSiteProfiles WRKY domain profile. 226 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01535 452 SUPERFAMILY WRKY DNA-binding domain 225 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g01535 452 FunFam probable WRKY transcription factor 31 216 293 - -
Vian3g01535 452 Pfam WRKY DNA -binding domain 233 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01535 452 MobiDBLite consensus disorder prediction 182 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01535 Vian-Chr3 16752575 16755193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01535 106 421 WRKY Transcription Factor Family AT4G04450 39.747 7.69e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian3g01535 WRKY 2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01535 - - vun:114192179 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01535 3 16752575 16755193 Vian3g01535 3 16752575 16755193 ECH
Vian2g02772 2 48677514 48682319 Vian3g01535 3 16752575 16755193 PCT