Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01531 ATGTACTTTCCAGTTCAAAGGGATTCTGCTGTGAACAATTTACAACCAAATTTTGAACAAAGTTCTTGTCTTCGTCTTCCTTTAAAACGAGTACACATGATTAAAAGAGCTGAATTTTCAAAGGCTGCTTCTAGCAGCAAAGGTTCTGAGCATTCCTCAGTGATAAATTCGTGTAATGGATCAGTCGAAAGCCAAAACCCTTTGAGTTCTGATGCATCAAACCTTGTTCCTGATGAGCAATCTCCAGCTGTTGGTCATAACAGTGGTCTTGGTGTTCGCGGATCTCGGGGTCTGCATCGTAACCAAAAATCAAGCTCAGTAGGTTTTGAAGGAAAGGGAAAAGCTGAAACAAAGTACAGTGATGAAGCCTTGTTAGAATCTTCTTCCGTATGCTCTCTTGGAGCCTCAAACAACAGAAACGTCTGTGGTAGGAAACATGATGACATCGATGACTCGGTGCAGAACTATGAAGAAGCAGAAGATGTAGTGAAGGAAAAGCCTGCTCGGGAAGGCACAGGAGTGAAGAGAAGTAGGAATGCAGAAGCTCATAATTTGTGTGAAAGGAAACGAAGAGATAAGATAAACAAGAGGATGCATATATTGAGGGAGCTCATACCCAACTGCAACAAGACGGATAAAGCTTCAATGCTTGATGATGCCATTGAATATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGAAAATGGGTGGCGGATTTTGCATGCCTTTTATGATGTTACCTGGTCATGGTATGATGAACGCACCCCATTTGCAGCAGTTAATGGGAGTTGAAATGGGGTTAAGGTCAGGCACAACCATCCCTTGCAATCTGCCTCAGTTCGCTACGACACCTTTGCCTGCAATCACTGACAACAGAGTTCATATGTTCCGTTTCCCAAACCAAGTTCCGACCATGCCCATTTCTCATGCATCGTTCATTCCAATGGTTGGAAATCCTCGTATTCCAACTGGCACAGCTACCAACAGGGCTGAAAACCCTTCCCACCAGTTAACTACTCTATTGGCCTCACTCTCCAAGAACTCATATCTTAATGGACAAACTGAACTTGCAACAAAACAACCATCGAATCAGGTTTTCCCTCACCAGTAG 1113 0.4322 MYFPVQRDSAVNNLQPNFEQSSCLRLPLKRVHMIKRAEFSKAASSSKGSEHSSVINSCNGSVESQNPLSSDASNLVPDEQSPAVGHNSGLGVRGSRGLHRNQKSSSVGFEGKGKAETKYSDEALLESSSVCSLGASNNRNVCGRKHDDIDDSVQNYEEAEDVVKEKPAREGTGVKRSRNAEAHNLCERKRRDKINKRMHILRELIPNCNKTDKASMLDDAIEYLKTLKLQLQIMKMGGGFCMPFMMLPGHGMMNAPHLQQLMGVEMGLRSGTTIPCNLPQFATTPLPAITDNRVHMFRFPNQVPTMPISHASFIPMVGNPRIPTGTATNRAENPSHQLTTLLASLSKNSYLNGQTELATKQPSNQVFPHQ 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01531 370 Gene3D - 174 236 IPR036638 GO:0046983
Vian3g01531 370 MobiDBLite consensus disorder prediction 42 81 - -
Vian3g01531 370 SMART finulus 184 233 IPR011598 GO:0046983
Vian3g01531 370 MobiDBLite consensus disorder prediction 164 184 - -
Vian3g01531 370 PANTHER TRANSCRIPTION FACTOR PIF3 45 338 IPR044273 GO:0003700|GO:0006355
Vian3g01531 370 MobiDBLite consensus disorder prediction 40 116 - -
Vian3g01531 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Vian3g01531 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 242 IPR036638 GO:0046983
Vian3g01531 370 Pfam Helix-loop-helix DNA-binding domain 181 227 IPR011598 GO:0046983
Vian3g01531 370 CDD bHLH_AtPIF_like 178 240 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01531 Vian-Chr3 16704035 16705412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01531 144 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 58.261 2.49e-33 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g01531 HLH 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01531 K12126 - gmx:100818543 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01531 3 16704035 16705412 Vian3g01531 3 16704035 16705412 ECH
Vian2g02768 2 48639492 48641815 Vian3g01531 3 16704035 16705412 PCT