Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01529 ATGATGACAATGAAGCTGCTTTTGGTAGCCGTTGAACTTGCATGCTTAGTTTCTGGGATCTTCTCCTTCGGATCTCAGACACTGTCTCAGCTTTCTTTCTTAGAAAACGGTGTCGTCTCCACTCGCCCTTCCTCAACTCAACCTCAACCTCTTATGGTCGACCTCACTCTCATTCAAGAAGCTCATTCTAAAGGAGCTGTCTGTTTGGATGGAACATTGCCTGGTTACCATTTGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTTGTTCATTTGGAGGGGGGAGGATGGTGTGATACCATCAGAAATTGTGTCTATAGAAAAAATACTCGTCGTGGTTCCTCAAAATTCATGGAAAATCAAATACCATTCACGGGAATATTGAGCAACAAACCTGAAGAAAACCCTGATTTCTTTAATTGGAACAGAGTTAAGTTACGGTACTGTGATGGGGCGTCTTTCAGTGGAGATGCCGAAGATGAGTCTGCACAGCTTCAATTTCGAGGACAAAGAATATGGCTAGCTGCAATGGAGGAATTAATGTCGAAAGGAATGCAGAAAGCCAACCAGGCACTTCTCTCTGGATGCTCTGCGGGTGGTCTGGCATCCATAATACATTGTGATGAGTTCAGGAGCTTATTTCCAGAATCTTCCAAAGTGAAATGTTTGAGTGATGCAGGTTTCTTTCTTGATGCAATTGATGTATCTGGGGGACGCACACTGAGGAATCTGTTTGGAGGTGTTGTTCAGTTGCAGGATGTACAAAAAAACCTTCCAAAAAGTTGTCTCAACCAACTAGACCCGACTTCGTGCTTCTTTCCTCAGAATTTGATCGATCATATTGAAACCCCATTGTTTCTACTCAACACAGCTTATGATGTGTGGCAGGTCCAAGCCAGTTTAGCACCACCTTCTGCTGACCGCCTTGGCTCTTGGAATGAATGCAAATCCAACCATGCAAATTGTAGCTCATCACAAATTCAGTTCCTCCAAGACTTCAGAAATCAAATGCTGAGTGACATTACAGACTTCTCAAGGTCATCTCAAACTGGACTATTCATAAATTCTTGTTTTGCTCATTGTCAGTCTGAGAGACAGGAGACATGGTTTGCTGATGACTCTCCCCTTATTGAGGACAAGCCAATTGCAGTAGCTGTTGGAGACTGGTATTTTGACCGAGAAGTTGTCAAAGCTATTGACTGTGCTTACCCGTGTGACAACAGCTGCCATAATCTGGTGTTTAACTTTAAGTGA 1257 0.4344 MMTMKLLLVAVELACLVSGIFSFGSQTLSQLSFLENGVVSTRPSSTQPQPLMVDLTLIQEAHSKGAVCLDGTLPGYHLDRGFGSGADSWLVHLEGGGWCDTIRNCVYRKNTRRGSSKFMENQIPFTGILSNKPEENPDFFNWNRVKLRYCDGASFSGDAEDESAQLQFRGQRIWLAAMEELMSKGMQKANQALLSGCSAGGLASIIHCDEFRSLFPESSKVKCLSDAGFFLDAIDVSGGRTLRNLFGGVVQLQDVQKNLPKSCLNQLDPTSCFFPQNLIDHIETPLFLLNTAYDVWQVQASLAPPSADRLGSWNECKSNHANCSSSQIQFLQDFRNQMLSDITDFSRSSQTGLFINSCFAHCQSERQETWFADDSPLIEDKPIAVAVGDWYFDREVVKAIDCAYPCDNSCHNLVFNFK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01529 418 PANTHER NOTUM-RELATED 16 412 IPR004963 GO:0016787
Vian3g01529 418 Pfam Pectinacetylesterase 47 396 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01529 Vian-Chr3 16655137 16662921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01529 7 417 Carbohydrate Esterase AT3G62060 65.952 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01529 K19882 - gmx:100811787 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02745 2 48388310 48394054 Vian3g01529 3 16655137 16662921 ECH
Vian3g01529 3 16655137 16662921 Vian2g02745 2 48388310 48394054 ECH
Vian3g01529 3 16655137 16662921 Vian3g01529 3 16655137 16662921 ECH
Vian1g00434 1 4011712 4016011 Vian3g01529 3 16655137 16662921 ECH
Vian2g02764 2 48582571 48586748 Vian3g01529 3 16655137 16662921 PCT