Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01520 ATGGCAATGGCAAAGAATGCATCAGCCATGTGCCATATGGGTGTAGTTCCACCAGATAAGGCACAACTTAGAGTAGCATCCGCAGGTTGGTTGAAAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGTGGTGCATGTGGCTATGGAAATCTCAACACAGATGGTTATGGAATAAAAACAGCTGCTTTGAGTACTGCTTTGTTTAATGATGGCAAATCATGTGGTGGTTGCTATCAGATAGTTTGTGACGCAAGCCAAGTGCCCCAATGGTGCCTAAGTGGCACTTCCATTACGATCACTGCTACAAATTTCTGCCCTCCAAACTTTGCACTGCCTAGTGACAATGGGGGTTGGTGTAATCCTCCAAGACCACACTTTGACATGTCTCAACCAGCCTTTGAGATGATCGCCAAATACAAGGCTGGAATTGTCCCAATTTTATACAGAAAAGTTGGGTGCAAAAGAAGTGGAGCCATCAGATTTACCATCAATGGGAAGGACTTTTTCGAACTGGTGCTTATAAGCAACGTAGGAGGAGCAGGGGATATTTCTCTAGTTTGGATCAAAGGGTCAAAAATGAGTAACTGGGAATCTATGTCAAGGAATTGGGGTGCTAACTGGCAAAGCTTAAGCTACCTCAACGGCCAGAGCTTGTCCTTCAGAATCCAACTCAGCAATGGAAAGACTCTCACAGCTTTTGATGTGGCACCGTCCAATTGGAGATTTGGCCAGTCTTTCATCAGCAAGGTTCAGTCATGA 774 0.4509 MAMAKNASAMCHMGVVPPDKAQLRVASAGWLKAHATFYGGSDASGTMGGACGYGNLNTDGYGIKTAALSTALFNDGKSCGGCYQIVCDASQVPQWCLSGTSITITATNFCPPNFALPSDNGGWCNPPRPHFDMSQPAFEMIAKYKAGIVPILYRKVGCKRSGAIRFTINGKDFFELVLISNVGGAGDISLVWIKGSKMSNWESMSRNWGANWQSLSYLNGQSLSFRIQLSNGKTLTAFDVAPSNWRFGQSFISKVQS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01520 257 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Vian3g01520 257 Gene3D - 162 257 IPR036749 -
Vian3g01520 257 Gene3D - 14 159 IPR036908 -
Vian3g01520 257 FunFam Expansin 163 256 - -
Vian3g01520 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Vian3g01520 257 SUPERFAMILY Barwin-like endoglucanases 24 181 IPR036908 -
Vian3g01520 257 PANTHER EXPANSIN-A15 23 253 IPR002963 GO:0009664
Vian3g01520 257 FunFam Expansin 20 159 - -
Vian3g01520 257 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Vian3g01520 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Vian3g01520 257 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Vian3g01520 257 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Vian3g01520 257 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Vian3g01520 257 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Vian3g01520 257 Pfam Lytic transglycolase 65 153 IPR009009 -
Vian3g01520 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Vian3g01520 257 CDD DPBB_EXPA_N 29 158 - -
Vian3g01520 257 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Vian3g01520 257 SMART dpbb_1 65 153 IPR007112 -
Vian3g01520 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Vian3g01520 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Vian3g01520 257 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Vian3g01520 257 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Vian3g01520 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Vian3g01520 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Vian3g01520 257 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Vian3g01520 257 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Vian3g01520 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01520 Vian-Chr3 16583292 16585487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01520 22 255 Expansin Gene Family AT4G01630 78.632 3.59e-141 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01520 - - gmx:100813434 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01520 3 16583292 16585487 Vian3g01520 3 16583292 16585487 ECH
Vian2g02760 2 48541841 48542802 Vian3g01520 3 16583292 16585487 PCT