Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01516 ATGGTTTCTTCTTCTACCATACCTCTCTCTTCTTCCATTTCCATATTCAAAAACCCCTCTCTCCATCTCCTCAGAAGACCAACCACCTCCGTTTCATTCAACACCCTTCCCCGTAACTCCACGCTCTCTTCCGTTACTTCGGCCATTACCACCCCCACTTCTTCCGTTCTCACCCAACAATCTTTCGAGGGTTTAACTCTGGACGACGTTAGCAATGGCCTCCAATTTGGCTATGACCACCAACCCGACCACGTCAGCGACCACGAACTTGACATTTCCAAGTTGTCTTTACCTTCCTCCCTCTTTCACGCCCTACAAAAACGTGGAATCACAAGCCTCTTTCCCATTCAGAGAGCTGTGTTAGTGCCTGCATTAGAAGGTAGAGATATCATTGCTCGAGCAAAGACCGGCACTGGCAAAACATTAGCATTCGGAATTCCAATTCTCAGAGGCCTCACTCATGATGATGATGATGAGCAAAGTTCTCACAGGAGGCATAGCAGGCTTCCCAAGGCATTAGTCCTAGCACCTACTAGGGAGTTAGCCAAGCAAGTTGAGAAGGAGATACAGGAATCTGCTCCTTACGTGAAAACGGTTTGTGTTTATGGGGGTGTTTCTTATGTAACGCAGCAGAGTGCGCTTTCGCGAGGTGTTGATGTGGTGGTTGGAACACCGGGTAGAATAATTGATCTATTGAATGGAGGTAGCCTTACTCTGAGTGAGGTGCAGTATTTGGTGCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGACGTGGAGGTCATTTTGGATAAGGTCCCTGCGCAGCGCCAGACCATGTTGTTTTCTGCTACCATGCCTGGTTGGGTCAAGAAACTGTCCAGAAAGCATTTGAACAATCCTTTGACAATTGATTTGGTAAAATCTTTTGTTGCTTTTTTTGCTTGTCTTCTCTCTGAATATGCACAGTTGTTGACTATGTACTTGCTTATTTATGGAGTACGACTGCCAGTCTCCAGCCGAGCTGAGTTAGTTGCTTTAAGTGGGCATCTTCGCCCCCCAAGCCGAGCTTGGAGTTTCTCTTTTGTTGTCAAATTGGTTGGCGAACAAGAAGAGAAACTTGCTGAAGGGATCAAACTTTATGCTTTATCAGCCACTGCCACTTCAAAACGGACAGTTCTGTCTGATCTTATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACGCAGACAAAAAAGGATGCTGATGAAGTATCATTGGCATTAACGAGTAGTATAGCCTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGACAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCTGCTCGTGGACTTGATATTCCGAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGCACTGGGCGGGCAGGAAAAGAGGGTACTGCCATATTGATGTACACCAGTAGCCAGAAGAGAACAGTTAGATCCCTTGAGCATGATGTTGGCTGCAAATTTGAATTCATTAGTCCACCGGCTATGGAAGAAATTTTGGAGTCATCTGCTGAACAAGTTGTTGCTACACTTAATAGAGTTCATCCAGAGTCTGTGAAGTTTTTCACTGCAACTGCGCAAAAACTGGTTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCTCTAGCACAGATGAGTGGATTCTCTCAACCTCCATCATGTCGGTCTCTTATCAATCATGAACAGGGATGGATTACACTTCAACTTACACGAGATTCAGACACTTCTGGAAGATTTTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGATTAAAGGAGCTGTCTTTGATCTCCCGGAGGAAGTTGCTAGAGAGTTGCTCAAAAAGGAACTGCCTTCTGGAAACACTATTTCCAAAATCACCAAATTACCTCCTTTGCAAGACGATGAACCTGCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGACAGAAGTAACCGAAGGGGTTCTAATTCTAGGGATCAAAGAGGCTTTAGAAGTTCACGAGGATGGGAAGGAGGCCAAGACTCTGATGATGAGTTCGGAACAGGCAGTAGAAATTTCAGATCAGGCAACAATAGGTCTCGAATGGGAAAAAACAGCGGCGATGACTGGCTAATTGGAGGTGGACGATCCAACAGATTTTCATCATCCAACAGGTTATAG 2307 0.4456 MVSSSTIPLSSSISIFKNPSLHLLRRPTTSVSFNTLPRNSTLSSVTSAITTPTSSVLTQQSFEGLTLDDVSNGLQFGYDHQPDHVSDHELDISKLSLPSSLFHALQKRGITSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPILRGLTHDDDDEQSSHRRHSRLPKALVLAPTRELAKQVEKEIQESAPYVKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLLNGGSLTLSEVQYLVLDEADQMLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKHLNNPLTIDLVKSFVAFFACLLSEYAQLLTMYLLIYGVRLPVSSRAELVALSGHLRPPSRAWSFSFVVKLVGEQEEKLAEGIKLYALSATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSLALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQKRTVRSLEHDVGCKFEFISPPAMEEILESSAEQVVATLNRVHPESVKFFTATAQKLVEEQGASALAAALAQMSGFSQPPSCRSLINHEQGWITLQLTRDSDTSGRFFSARSVTGFLSDVYSPAADEVGKIHLIADERIKGAVFDLPEEVARELLKKELPSGNTISKITKLPPLQDDEPASDFYGKFSDRDRSNRRGSNSRDQRGFRSSRGWEGGQDSDDEFGTGSRNFRSGNNRSRMGKNSGDDWLIGGGRSNRFSSSNRL 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01516 768 FunFam Nucleolar RNA helicase II 382 572 - -
Vian3g01516 768 Pfam GUCT (NUC152) domain 581 681 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vian3g01516 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 300 IPR014001 -
Vian3g01516 768 SMART ultradead3 109 310 IPR014001 -
Vian3g01516 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 513 IPR027417 -
Vian3g01516 768 Pfam DEAD/DEAH box helicase 114 289 IPR011545 GO:0003676|GO:0005524
Vian3g01516 768 Gene3D - 91 304 IPR027417 -
Vian3g01516 768 CDD GUCT_Hera 589 668 - -
Vian3g01516 768 MobiDBLite consensus disorder prediction 688 723 - -
Vian3g01516 768 Pfam Helicase conserved C-terminal domain 388 494 IPR001650 -
Vian3g01516 768 SMART helicmild6 414 494 IPR001650 -
Vian3g01516 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 534 IPR001650 -
Vian3g01516 768 Gene3D - 377 581 IPR027417 -
Vian3g01516 768 MobiDBLite consensus disorder prediction 727 746 - -
Vian3g01516 768 CDD DEADc 101 301 - -
Vian3g01516 768 CDD SF2_C_DEAD 386 503 - -
Vian3g01516 768 MobiDBLite consensus disorder prediction 671 768 - -
Vian3g01516 768 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 88 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01516 Vian-Chr3 16556147 16564140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01516 83 516 Eukaryotic Initiation Factors Gene Family AT1G72730 32.723 5.90e-53 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01516 - - mus:103971428 832.787