Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01506 ATGGTCTCTGCTGTTTCTCTCATTCTCGTAGTAGGCGTTGCCCTAGGCGTTGTCGCTTTTGTCTCCACCGGCAACAACGACGAACCCGCCACCTCAGGCGACACCACCGGAAAGGTCACCACCCACACGAAAGCCGTGCAAGCCGTGTGCCAAAACACTGACGATAAGAAGTTCTGCTCTGACACTTTCAGCTCCGTCAACACCTCAGACCCAACCGAATACGTCAAAACCGTGGTGAAAAAAGCCATGGACGACGTCATCAAAGGCTTCAACCTAAGCGATACTCTAAAGGTCGAAAACAGCAAGGGAAATTCAACCGTCAAGATGGCCCTTGATGATTGCAAGGACCTGTTGGAATTCGCCATCGACGAGTTACAAGCGTCTGAGATTCTAGTCAAAGAGAACAACATTAACAACATCAACGACCGCGCTGCGGACCTCAAAAACTGGATTGGCGCCGTCGTTGCATACAAGGAATCGTGCCTGGACGGGTTCGACACGGACGGGGAGAAGGAGGTGCAATCCAAGTTGAAAACCGAAAGTTTGGACGGAATTGGGAAGTTAACGGGGTTAGCTCTTGACGTTGTGTCCGGCTTCGCGGAAGTACTCTCGGGCTTCAATTTAGATCTGATTGCCAAGACTTCGTCTCGTCGTCTTCTCGATGTGGACCAAGAGGGATATCCATCGTGGTTGTCCATGCCGGATCGGAAGCTCTTGGCGGACACAGCTTCCGTTAAACCTAACGCGGTTGTTGCCAAGGATGGTAGTGGCGATTATAAGACCGTTGAGGAGGCCATTAACTCCTACCCCAAAAATCATCAGGGCAGATTCATTATCTACGTCAAGGCCGGTACCTATGATGAATACATCAAAGTTGACAAAAAGAAGAATAGAATTCTGCTATACGGCGATGGCCCCACAAAGACAATTATCACCGGCAATAAAAACGTGGTTGATGGTTATAAGACAATTAGAACTGCTACCTTCTATCCGAATCAGCAGAACATTATCGTGGCGGACGGGACGGACCAAAAGAACATGCCGACAGGAGCGGTGCTGCAAAACTGCGATATCATCGCGGAGCCGGAACTGGAGAAGGTAAAGACGTCGTTTAAGACGTACTTGGCGAGGCCGTGGAAGGCATATTCGAGGGCAATCTTCCTAGAAAACACGATCACCGATGTGATTCAGCCAGATGGGTATCTTCCCTGGAATGGGAACCTGAACCTGGACACGTGTTTCTTTGCTGAGTATGAGAACACTGGGGCGGGTGCCGATCTGAAAGCTAGGGTGAAATGGAGTCGCGGGGTCCTTAGCAAGGCCGATGCTAACAAATACACCGCTGACCAGTGGCTCCAGGCAAACGCCTGGCTCCCTGCTACTGGCATTCCTTTCACTCCTGGTCTCACCAAACCTTGA 1419 0.506 MVSAVSLILVVGVALGVVAFVSTGNNDEPATSGDTTGKVTTHTKAVQAVCQNTDDKKFCSDTFSSVNTSDPTEYVKTVVKKAMDDVIKGFNLSDTLKVENSKGNSTVKMALDDCKDLLEFAIDELQASEILVKENNINNINDRAADLKNWIGAVVAYKESCLDGFDTDGEKEVQSKLKTESLDGIGKLTGLALDVVSGFAEVLSGFNLDLIAKTSSRRLLDVDQEGYPSWLSMPDRKLLADTASVKPNAVVAKDGSGDYKTVEEAINSYPKNHQGRFIIYVKAGTYDEYIKVDKKKNRILLYGDGPTKTIITGNKNVVDGYKTIRTATFYPNQQNIIVADGTDQKNMPTGAVLQNCDIIAEPELEKVKTSFKTYLARPWKAYSRAIFLENTITDVIQPDGYLPWNGNLNLDTCFFAEYENTGAGADLKARVKWSRGVLSKADANKYTADQWLQANAWLPATGIPFTPGLTKP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01506 472 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 180 IPR035513 -
Vian3g01506 472 FunFam Pectinesterase 42 200 - -
Vian3g01506 472 NCBIfam pectinesterase inhibitor domain 39 181 IPR006501 GO:0004857
Vian3g01506 472 Gene3D - 332 469 IPR012334 -
Vian3g01506 472 Gene3D - 242 331 IPR012334 -
Vian3g01506 472 SUPERFAMILY Pectin lyase-like 245 468 IPR011050 -
Vian3g01506 472 Pfam Pectinesterase 248 329 IPR000070 GO:0030599|GO:0042545
Vian3g01506 472 Pfam Pectinesterase 331 454 IPR000070 GO:0030599|GO:0042545
Vian3g01506 472 Pfam Plant invertase/pectin methylesterase inhibitor 45 192 IPR006501 GO:0004857
Vian3g01506 472 PANTHER PECTINESTERASE 13 329 - -
Vian3g01506 472 SMART PMEI_2 41 195 IPR006501 GO:0004857
Vian3g01506 472 CDD PMEI-like_3 48 200 - -
Vian3g01506 472 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 199 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01506 Vian-Chr3 16437980 16439762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01506 331 469 Carbohydrate Esterase AT3G05610 43.972 5.19e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01506 K01051 - gmx:100820142 484.182