Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01503 ATGCCTTTGTACGAGTTATACCGTCTGGCCAGAGAAAAGCTTGGTACAGAGAATAACAGCACACGTGCATCTGATCAATGTTCCTCACCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCTAGCCAGGGTCAGTCTAGTAAAGTTAGAAGGAGCCCATCTTGCAAGAGTTTGCCATCTCACTGCTTACCATCTCACAGTCCCAAGGGTAGAGACAAAGATGTAGGATATGGTGCCAACAGGATTGGAAAATTTAGAGATTTAGACTCTGGATTGAATGAAATTTCAATGTCGGTGCCGTCCCGTGAAGTTGATTTCTGTCAAGACGAAGATGTGTTACCTTGGTTTGATTACCCAACAATGGATGGTTCCTTGCAACATGACTATGGTTCTGATTTCCTCCCTGCCCCAACTAGCTTTACTCTATCGGATAAAAAAAGTAATAGCAGTATGGCTTTGAGGGATTCTCATAAAACTTCTGAAGAACAAGGGAATGCTTTCAAGGATTCTTCAGCTGAGCAGGTTGGAACTGTCGAGCCCAAAGCTAGCACCAATCAGTTATACCCTCCATCATTGCATCATTGTCAAACATCTTTTGTATCTTCAAGATCCAGAACATCAGATATAACTGAAAATAACAATACTAGTAATGCAAACCAGGATGCCACCTATGGCGAAATTACCAATTTTCTATCTTCCTCAAGTGATTTTTCTAGCCCAAAGGGGAAGAAGCAAGAGCCACCTCTGCCTGGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTTGCTAGGCCTGCGGCAAAGGTAAGAGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGTCTTCAGCAAGATCAGACAGTATGGAAATTAAGAATAAAGATGCAGCTGCAACTAGCAGCAATCCTCCTGAATCAATTGTTATTGATTCAAGTGGTGAATGTCCGAAGGAACTGACTATGCACTGTCAGCAGAATGTGGATCAATCCAAGACAGATTTGAATACTTCACTGTTGAAAGCTGTTGAACAGAATGCAGTGCTTTCTAAGCAGTCAGAGACTGCTTGTAATGAGAGTTCCACTAAGATTGACCAAATTGCTGATCAAGTTCTTGGTGACAGTGGTGCTAAAGGGCAGACAACTGCTGAAAAAAGTATGGAGGCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCTGATAGAGGTTCAGATGAGCCAAATAAAAATTTGAAGCGAAAAAGAAAAGACACCGATGATTCTGAGTGCCACAGTGAAGATGCTGAAGAAGAATCAGCGGGTGTTAAAAAGGCATCTGGAGGGCGTGGAGGTACAGGTTCCAAGAGAACCCGTGCAGCTGAAGTGCATAACCTATCTGAAAGGAGGCGAAGGGACAGAATCAACGAGAAGATGCGTGCGTTGCAAGAACTCATTCCAAATTGCAATAAGGTGGATAAAGCCTCAATGCTAGACGAGGCCATCGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATGCACCACATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGGGTGGGAATGCCCGACATGAATGGTGGATCTTCAAGATTCCCTATGATTCAGGTGCCCCAGATGCAAGGAAATCATATCCCTGTCGCCCAAATGTCTGGACCTACTGCTTTACATGAGATGGCCGGATCAAATCTTCCAAGGCTCGGGCTTCCTGGACAAGTACATCCCATGCCAATGCCGCGAGCTCCCATGCTGCCGTTTTCTGGAGGACCTGTCATGAACTCATCAGCTCTGGGACTACATGCTTGTGGATTGTCAGGACTTGTTGAAACCGTGGATACAGCTTCTGCATCTGGCTTAAAGGATCAAATGCCAAACGTTGGCCCACTAGTTAAGCAAAGCACTGGTGGCCGTGACTCAACAAGTCAGATGCCTACACAGAGTGAAACAGCTGTTGTTGGATTTGAGCAATCTGCTATGGTTCATAACAGCGGTCATACCTCTGGGGCTAATGACAATGGAGCTCTTAATCCTTGTCCCAGCAGATAA 2166 0.4451 MPLYELYRLAREKLGTENNSTRASDQCSSPENDFFELVWENGQISSQGQSSKVRRSPSCKSLPSHCLPSHSPKGRDKDVGYGANRIGKFRDLDSGLNEISMSVPSREVDFCQDEDVLPWFDYPTMDGSLQHDYGSDFLPAPTSFTLSDKKSNSSMALRDSHKTSEEQGNAFKDSSAEQVGTVEPKASTNQLYPPSLHHCQTSFVSSRSRTSDITENNNTSNANQDATYGEITNFLSSSSDFSSPKGKKQEPPLPGNGSSSTIMNFSHFARPAAKVRANLQNIGLKSGLSSARSDSMEIKNKDAAATSSNPPESIVIDSSGECPKELTMHCQQNVDQSKTDLNTSLLKAVEQNAVLSKQSETACNESSTKIDQIADQVLGDSGAKGQTTAEKSMEAAVASSSVCSGNGADRGSDEPNKNLKRKRKDTDDSECHSEDAEEESAGVKKASGGRGGTGSKRTRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFSPMGVGMHMGYGMGYGVGMPDMNGGSSRFPMIQVPQMQGNHIPVAQMSGPTALHEMAGSNLPRLGLPGQVHPMPMPRAPMLPFSGGPVMNSSALGLHACGLSGLVETVDTASASGLKDQMPNVGPLVKQSTGGRDSTSQMPTQSETAVVGFEQSAMVHNSGHTSGANDNGALNPCPSR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01503 721 MobiDBLite consensus disorder prediction 382 474 - -
Vian3g01503 721 MobiDBLite consensus disorder prediction 154 168 - -
Vian3g01503 721 CDD bHLH_AtPIF_like 459 521 IPR047265 -
Vian3g01503 721 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Vian3g01503 721 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 519 IPR036638 GO:0046983
Vian3g01503 721 MobiDBLite consensus disorder prediction 288 313 - -
Vian3g01503 721 MobiDBLite consensus disorder prediction 45 81 - -
Vian3g01503 721 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Vian3g01503 721 FunFam Basic helix-loop-helix transcription factor 454 517 - -
Vian3g01503 721 MobiDBLite consensus disorder prediction 382 407 - -
Vian3g01503 721 MobiDBLite consensus disorder prediction 667 684 - -
Vian3g01503 721 SMART finulus 465 514 IPR011598 GO:0046983
Vian3g01503 721 MobiDBLite consensus disorder prediction 413 444 - -
Vian3g01503 721 MobiDBLite consensus disorder prediction 169 245 - -
Vian3g01503 721 MobiDBLite consensus disorder prediction 658 684 - -
Vian3g01503 721 MobiDBLite consensus disorder prediction 45 65 - -
Vian3g01503 721 MobiDBLite consensus disorder prediction 144 261 - -
Vian3g01503 721 Gene3D - 454 517 IPR036638 GO:0046983
Vian3g01503 721 PANTHER TRANSCRIPTION FACTOR PIF3 1 683 IPR044273 GO:0003700|GO:0006355
Vian3g01503 721 MobiDBLite consensus disorder prediction 700 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01503 Vian-Chr3 16398933 16402388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01503 1 588 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.018 9.40e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g01503 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01503 K12126 - gmx:100794974 1142.49