Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01500 ATGGCTTCAACCAACCCTTCTCCAAATGCTTCCCCTGTTGCAGTGCCTCTTGTTCTTGGTGGCATGACTAGGCAGAAAGTGAAACTTGCGTATATCAGTGATGTGACGGCAAGGAAATCGACGTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGGGAACTGACGATTCTGTGTGGGATCCCAGCCTGCGCAATAATTTCAAGTCCTTTTGAAGCTAAGCCAGAGATTTGGCCAGATCCTGAGGGAGCAAAGCAAGTGATTCAGAGGTATCTGGATGCATCTGTTATTGATGAAAGCAAGAATGTGAACCAAGAGAGTTTCCTGATTCAGAGGATTGCCAAAGCCCAGGAACAGTTGAAGAAGCTGCGTCAGGAGAATCAAGAGAAGGAGAAGATCTTGTCCTTGTTCAGCTACATGCAAGGTGAAGACCTCCCGACTGATGTTCAAGAACTCAAACAACTCAAAAAGCTCATTGAGAACACTCTGAAGGAAACTAAAATCAAGATGGACGACCTCAATTGTGAGTCTATGTAG 540 0.4481 MASTNPSPNASPVAVPLVLGGMTRQKVKLAYISDVTARKSTYKKRKKGIIKKVRELTILCGIPACAIISSPFEAKPEIWPDPEGAKQVIQRYLDASVIDESKNVNQESFLIQRIAKAQEQLKKLRQENQEKEKILSLFSYMQGEDLPTDVQELKQLKKLIENTLKETKIKMDDLNCESM 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01500 179 ProSiteProfiles MADS-box domain profile. 22 70 IPR002100 GO:0003677|GO:0046983
Vian3g01500 179 SUPERFAMILY SRF-like 22 103 IPR036879 GO:0003677|GO:0046983
Vian3g01500 179 Coils Coil 150 177 - -
Vian3g01500 179 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Vian3g01500 179 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Vian3g01500 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 71 IPR002100 GO:0003677|GO:0046983
Vian3g01500 179 Gene3D - 34 139 IPR036879 GO:0003677|GO:0046983
Vian3g01500 179 Coils Coil 107 134 - -
Vian3g01500 179 PANTHER SERUM RESPONSE FACTOR HOMOLOG 24 170 - -
Vian3g01500 179 FunFam Agamous-like MADS-box protein AGL80 34 118 - -
Vian3g01500 179 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01500 Vian-Chr3 16356410 16360409 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01500 22 174 MADS-box Gene Family AT5G26630 48.077 1.64e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian3g01500 SRF-TF 7.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01500 - - var:108325536 298.516