Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01498 ATGGCTAGGAAGAAATTGAAACTTGCTTTTATCTCTGATGAGATGACAAGGAAAAGCACGTACAAGAGAAGGAAGAAGAGTATGATGAAGAAGGTGGATGAACTTGCGACCCTCTGCGGGATCTCAGTTTGTGCTATAATTTGTAATCCTTTTGATTCTGAGACAGAAGTTTGGCCAAATCCAGAAGGAGCCAAGAAGGTGATCGAGAGGTTTAAGAATGCATCTGTGCTGAACAAAAGCAGGAATGTGAACCACGAAAGCTTCATGCTGCAAAGGATCGCCAAAGCCCAAAATGAATTGAAGATGCTACGTCAAGACAACTATGAGAAGGAGATTACCTTGTCCATGTTTCAGTTCATGCTAGGTCAAAACCTGCCAAATACCGTTCAAGAAATCAAAGAAATCCACAAAATGATTGACAAAAATATAAAACAGATTGAGAATAACTTGGCTGCACTCAACTCTCACTCTATTTGA 477 0.4004 MARKKLKLAFISDEMTRKSTYKRRKKSMMKKVDELATLCGISVCAIICNPFDSETEVWPNPEGAKKVIERFKNASVLNKSRNVNHESFMLQRIAKAQNELKMLRQDNYEKEITLSMFQFMLGQNLPNTVQEIKEIHKMIDKNIKQIENNLAALNSHSI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01498 158 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Vian3g01498 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian3g01498 158 Coils Coil 86 113 - -
Vian3g01498 158 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Vian3g01498 158 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Vian3g01498 158 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Vian3g01498 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vian3g01498 158 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01498 Vian-Chr3 16339821 16340297 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01498 1 146 Type I MADS-box Gene Family AT5G48670 41.611 5.58e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian3g01498 SRF-TF 5.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01498 - - var:108324686 269.626