Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01492 ATGGCTGCCATGAAGCTCATTGCAATATGTCAGTCCGGAGGCAAGTTTTTGACTGAGAAAGACGGTTGTTTGTCATATAAAGGTGGTGATGCTCATGCTATAGACATTGATGATGAAATGAAGTTTGACGAGTTCAAGGTGGAAGTGGCCGAAATGTTTAATATTAGAACTGATTGCATGTCAATCAAGTATTTCCTACCTGGAAATAAGAAGACTCTCATTACTGTATCTAATGACAAGGATCTGAAGCGAATGATTAAATTTCATGGGAGTTCTTCTACTGTTGATATTTATATCCTTTTTGAAGAGGTAGTTGCCCTTGAGGTATCAAACATGCCTGGCAGTAGGTCAAGCAGAACAACCTTGTCTGAAACAGTAGCACCAGCACCACTCAATGCTTGTCATAGTCATATTGTTGATACTGTGCTTGATCATGATACCAATCAAATTGATACAAATATGGATATGGACATGCTACCGGAAATTTCTCCCTCTCTTCCTCTTCAATCCTCAATCGAAGAGAAGTATGCCAAGGGAGCACAGCAGTGGCAGAATACTATAACAGGGGTGGGTCAAAGGTTCAGTAGTGTACATGAATTTCGAGAATCCTTGCGTAAATATGCCATTGCTCATCAATTTGCTTTCAAATATAAGAAAAATGATAGTCATCGAGTAACTGTTAAATGCAAAGCAGATGGTTGTCCTTGGAGAATTCATGCATCAAGGTTGTCAACCACTCAGTTGATATGTATAAAGAAAATGAATTCAACTCATACCTGTGATGGGGCTTTTGCAACAACAGGGCATCAAGCAACTAGAAGTTGGGTGGCCAGTATTATAAAGGAGAAGTTGAAAGATTTTCCGGATTACAAACCTAAGGACATTGTCAATGACATCAAACAGGAATATGGAATTCAACTGAACTATTTTCAAGCATGGCGTGGGAAAGAGATTGCTAAAGAGCAGCTTCAGGGTTCTTATAAAGAGGCATACAGTCAGTTACCTTTCTTCTGTGAAAAGTTAATGGAGGCTAATCCTGGTAGTCTTGCCATGTGCACAACAAAGGAAGACTCAAGCTTCGATCGTCTCTTTGTATCACTTCATGCTTTGTTGCATGGCTTCCAACAAGGTTGCCGACCACTGATTTTCCTTGATAGCATTCCATTGAGGTCAAAATACCAAGGAACACTGTTAGCAGCAACTTCTGCAGATGCTGATGATGGTGTGTATCCTGTTGCCTTTGCCATTGTTGATGATGCAGAATGTGATGATAGCTGGCATTGGTTCTTACTTCAACTCAAATCAGTGCTTTCAACATCTTGTCCCATAACATTTGTCGCTGACAGAGAGAAGGGGCTGAAAACTTCAATTGCAGAGATATTTGAAGGTTCATTTCATGCATACTGCCTGAGATACTTGAGTGAGCAACTTTTTAGAGACTTGAAAGCACAGTTTTCTCATGAGGTAAAGCGACTCATGATTGAGGATTTATATGCTGCTGCTTATGCCACCAAACCAGAAGGTTTTCACAACTCAATGGAGAGCATTAAAAAGATTTCTGAAGAAGCTTACAATTGGATTATTCAAAGTGAACCTCAGAACTGGGCAAATTCATTTTTTCAGGGTACTAGATATAATCACATGACATCCAACTTTGGGGAGCTCTTTTATAGTTGGGTATCTGATGCAGATGAATTGCCGATAACACAGATGGTCGATGTAATTAGGGGAAAGATTATGGAGTTGATAGTTGCCAGAAAGACTGCATCGGAACAATGGGAAACTAGGCTGAGTCCATCCATGGAAAATAAGCTTAAAAAAGAAAGTCAAAAAAATCATTCACTTTCAGTTCTGCAATCAACATGTAGCACCTATGAGGTATGTGGTGACACAACTGAGGTGGTTGATATTGACAGGTGGGAATGTAGTTGTAAAGCCTGGCAACTGACTGGTGTGCCATGTTGTCACGCCATTGCCGTAATTGTTGGCATTGGCCAAAGTATTTATGATTATTGCTCCAGATACTGTACAACTGAGAGCTACAGGTTGACGTATTCGGAGATTGTGCATCCAATTTCTGATGTGGAATTGTCTGCTTCAAAAGATTCTCAGCTTGTGGTAACAGTAACACCTCCTCCCACCAAAAGACCTCCTGGTCGACCAGCTACAAAGCGATTTGGACCTCAAGAAGTAGTCAAGCGCCATCTCCATTGCAGCCGATGCAAGGGACTTGGACATAACAAGTCTACTTGCAAGGAGTAA 2262 0.4072 MAAMKLIAICQSGGKFLTEKDGCLSYKGGDAHAIDIDDEMKFDEFKVEVAEMFNIRTDCMSIKYFLPGNKKTLITVSNDKDLKRMIKFHGSSSTVDIYILFEEVVALEVSNMPGSRSSRTTLSETVAPAPLNACHSHIVDTVLDHDTNQIDTNMDMDMLPEISPSLPLQSSIEEKYAKGAQQWQNTITGVGQRFSSVHEFRESLRKYAIAHQFAFKYKKNDSHRVTVKCKADGCPWRIHASRLSTTQLICIKKMNSTHTCDGAFATTGHQATRSWVASIIKEKLKDFPDYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYSQLPFFCEKLMEANPGSLAMCTTKEDSSFDRLFVSLHALLHGFQQGCRPLIFLDSIPLRSKYQGTLLAATSADADDGVYPVAFAIVDDAECDDSWHWFLLQLKSVLSTSCPITFVADREKGLKTSIAEIFEGSFHAYCLRYLSEQLFRDLKAQFSHEVKRLMIEDLYAAAYATKPEGFHNSMESIKKISEEAYNWIIQSEPQNWANSFFQGTRYNHMTSNFGELFYSWVSDADELPITQMVDVIRGKIMELIVARKTASEQWETRLSPSMENKLKKESQKNHSLSVLQSTCSTYEVCGDTTEVVDIDRWECSCKAWQLTGVPCCHAIAVIVGIGQSIYDYCSRYCTTESYRLTYSEIVHPISDVELSASKDSQLVVTVTPPPTKRPPGRPATKRFGPQEVVKRHLHCSRCKGLGHNKSTCKE 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01492 753 CDD PB1_UP2 9 99 - -
Vian3g01492 753 PANTHER POLYPROTEIN, PUTATIVE-RELATED 178 724 - -
Vian3g01492 753 Gene3D - 25 101 - -
Vian3g01492 753 Pfam MULE transposase domain 383 474 IPR018289 -
Vian3g01492 753 Pfam PB1 domain 24 92 IPR000270 GO:0005515
Vian3g01492 753 SMART 26again6 640 667 IPR006564 GO:0008270
Vian3g01492 753 SUPERFAMILY CAD & PB1 domains 21 94 - -
Vian3g01492 753 Pfam MuDR family transposase 186 251 IPR004332 -
Vian3g01492 753 Pfam SWIM zinc finger 635 661 IPR007527 GO:0008270
Vian3g01492 753 ProSiteProfiles Zinc finger SWIM-type profile. 625 665 IPR007527 GO:0008270
Vian3g01492 753 SMART PB1_new 19 102 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01492 Vian-Chr3 16298836 16301190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01492 9 87 MAP Kinase Kinase Kinase AT2G35050 34.568 5.34e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01492 K17604 - gmx:100797259 1362.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01492 3 16298836 16301190 Vian3g01492 3 16298836 16301190 ECH