Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01488 ATGTTTTTACTGCCAGGTGTTAAAGATGCAAGTGACAAAAAGATTCTTGTTGACATGCTATTCTGGGCTGTGGACAATCCTGCACCTGCTAATTACTTATTAATATCTGGTGATAGAGACTTTTCCAATGCTCTTCATCAGCTGCGGTTGAGGAGGTATAATATTCTTCTTGCACAGCCTAAGAAAGCTTCTGCACCCCTAGTAGCAGCTGCCAAGAGTGTGTGGCTTTGGACTAGTCTCTTGGCTGGAGGACCTCCCCTTACGAATGGTGAATCACTACAACTTGGTAATAATGACATCCAATCCTCTTCTGACTCCGTACAAAGTCCAGTCCATAATGCCTTTCAGATACCGCAGTATCTGGAATCCTATTCAGAAGTTCATACAGGAAATCAGAAATTTCCTGGTACAGCAAGGCAACTTGATTCTAGACATCATGGGAAGACAAATGGGAGAAAGTCAAATAAATCAAATGGACCCAAGGTCAAGAATCCAGCTCCAGTTGGACTTCAAGAAAATGATGGCAATATAAATTCTCCTCCACCTGGCAATTATACCCATAATGTTCCCCCAAGTGGTTCTACACCAAATTTTACTCTTGGCATTCCTGATCAAATGCGGGTCAATAATGGTAATCTACAAGACAATCATCAAAATCCACATTCACAACCATTAAGATCAAATATTTTTCCTTTGGAGCCTCCTTTTTCACCAAGCAATTCATTTTCTCTAAATTCCATTAGTTTTGGAACTTCAGTAGTGCCGGCTTGGACTGGTGGGCCCAGCTTCTCTGCAGCACCACTTACGAAGGTACCAGATACTGGTAATATTTCTGGATATCTTAGTAATGCTCACGATCCGCACCCTGTTAATCAATTGAACGGGGACTTGGAACGGAGTTCTTGCAGTAATTCTCCAAATCCTGTTAAATCTATTGATGAAGCAGATGGGCACATGATACAGAACGCACGAAATTTGTATAATGGCTATGCACATGGGCCAGAACACCGAACTTCATCATCAGCAACCGTGGGTAATAATAATCTTCCAGGTAATGGTATGTGGGGATCTCCAGAATCTCCTAAATCTTCTGAGCACGTCCAAGATCTTATAGGGGTTGTTTTACTTGCCTTGAACATACTGCAAACTGAAAAAATTAAGCCAACTGAGTCAAATATAACAGATTGTATTCGATTTGGAGATCCCAAGCATCGCAATACAGATGTCAAGAAGGCTCTGGAGATTGCTGTTGAGCAGCAGATGGTAGCGAAGCAGAATGTAGGTGCTTTGGAGTTGTTTGTTGGTAAGAATGATCAAGTTTGGAAGTCTGTATGCACTCTGGGTGGTAATCCTAAGAAGCACTCAAAAGAGACATGGAACAAAATAAAAAAATTTCTAGCTACTTCTCCTGGAAGATTGGCAATAATGAATACTCAGTGCAAGTACGAAGCAGGTATTGTGATTAAGAATATGTGCTTGAAAGATCATGCTTTGGGTGATGTCCTACAGATTTTGAGTTTAGCGATTTCCTATAAAAAATGGATTGTGCATCAACAATTGGGCTGGCAACCAGTTAACATCACCCTTGCAGAGAAATGTGATTCGGAGGTCATAGCATGCAAATAA 1626 0.4108 MFLLPGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRLRRYNILLAQPKKASAPLVAAAKSVWLWTSLLAGGPPLTNGESLQLGNNDIQSSSDSVQSPVHNAFQIPQYLESYSEVHTGNQKFPGTARQLDSRHHGKTNGRKSNKSNGPKVKNPAPVGLQENDGNINSPPPGNYTHNVPPSGSTPNFTLGIPDQMRVNNGNLQDNHQNPHSQPLRSNIFPLEPPFSPSNSFSLNSISFGTSVVPAWTGGPSFSAAPLTKVPDTGNISGYLSNAHDPHPVNQLNGDLERSSCSNSPNPVKSIDEADGHMIQNARNLYNGYAHGPEHRTSSSATVGNNNLPGNGMWGSPESPKSSEHVQDLIGVVLLALNILQTEKIKPTESNITDCIRFGDPKHRNTDVKKALEIAVEQQMVAKQNVGALELFVGKNDQVWKSVCTLGGNPKKHSKETWNKIKKFLATSPGRLAIMNTQCKYEAGIVIKNMCLKDHALGDVLQILSLAISYKKWIVHQQLGWQPVNITLAEKCDSEVIACK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01488 541 MobiDBLite consensus disorder prediction 129 226 - -
Vian3g01488 541 Gene3D - 5 79 - -
Vian3g01488 541 MobiDBLite consensus disorder prediction 171 226 - -
Vian3g01488 541 Pfam NYN domain 6 72 IPR021139 GO:0004540
Vian3g01488 541 CDD PIN_limkain_b1_N_like 6 60 - -
Vian3g01488 541 MobiDBLite consensus disorder prediction 335 363 - -
Vian3g01488 541 Pfam OST-HTH Associated domain 477 535 IPR025677 -
Vian3g01488 541 PANTHER LIMKAIN B LKAP 8 418 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01488 Vian-Chr3 16265854 16267564 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01488 6 98 C2H2 Transcription Factor Family AT5G61190 81.720 4.14e-43 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01488 - - vun:114190919 885.174