Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01485 ATGGGCGGAGGTGGAGCAGCGACGGCGGTTGCGGAGGCACAGTACTCGTTGGTCAAGACTTCGGTTTGGTGGGACATAGAGAACTGTCAAGTGCCCAAAGGGTGCGATCCCCACGCCATCGCGCAGAATATAAGCTCCGCTCTCGTTCGGATGAATTATTGCGGCCCCGTTTCCATCTCTGCTTACGGCGATACCACTGGCATCACTGCCTCCGTTCAGCATGCCCTCTCCAGCACCGGCATCTCCCTCAATCATGTCCCCGCCGGTGTTAAAGATGCAAGTGACAAAAAGATTCTTGTTGACATGCTATTCTGGGCTGTGGACAATCCTGCACCTGCTAATTACTTATTAATATCTGGTGATAGAGACTTTTCCAATGCTCTTCATCAGCTGCGGTTGAGGAGGTATAATATTCTTCTTGCACAGCCTAAGAAAGCTTCTGCACCCCTAGTAGCAGCTGCCAAGAGTGTGTGGCTTTGGACTAGTCTCTTGGCTGGAGGACCTCCCCTTACGAATGGTGAATCACTACAACTTGGTAATAATGACATCCAATCCTCTTCTGACTCCGTACAAAGTCCAGTCCATAATGCCTTTCAGATACCGCAGTATCTGGAATCCTATTCAGAAGTTCATACAGGAAATCAGAAATTTCCTGGTACAGCAAGGCAACTTGATTCTAGACATCATGGGAAGACAAATGGGAGAAAGTCAAATAAATCAAATGGACCCAAGGTCAAGAATCCAGCTCCAGTTGGACTTCAAGAAAATGATGGCAATATAAATTCTCCTCCACCTGGCAATTATACCCATAATGTTCCCCCAAGTGGTTCTACACCAAATTTTACTCTTGGCATTCCTGATCAAATGCGGGTCAATAATGGTAATCTACAAGACAATCATCAAAATCCACATTCACAACCATTAAGATCAAATATTTTTCCTTTGGAGCCTCCTTTTTCACCAAGCAATTCATTTTCTCTAAATTCCATTAGTTTTGGAACTTCAGTAGTGCCGGCTTGGACTGGTGGGCCCAGCTTCTCTGCAGCACCACTTACGAAGGTACCAGATACTGGTAATATTTCTGGATATCTTAGTAATGCTCACGATCCGCACCCTGTTAATCAATTGAACGGGGACTTGGAACGGAGTTCTTGCAGTAATTCTCCAAATCCTGTTAAATCTATTGATGAAGCAGATGGGCACATGATACAGAACGCACGAAATTTGTATAATGGCTATGCACATGGGCCAGAACACCGAACTTCATCATCAGCAACCGTGGGTAATAATAATCTTCCAGGTAATGGTATGTGGGGATCTCCAGAATCTCCTAAATCTTCTGAGCACGTCCAAGATCTTATAGGGGTTGTTTTACTTGCCTTGAACATACTGCAAACTGAAAAAATTAAGCCAACTGAGTCAAATATAACAGATTGTATTCGATTTGGAGATCCCAAGCATCGCAATACAGATGTCAAGAAGGCTCTGGAGATTGCTGTTGAGCAGCAGATGGTAGCGAAGCAGAATGTAGGTGCTTTGGAGTTGTTTGTTGGTAAGAATGATCAAGTTTGGAAGTCTGTATGCACTCTGGGTGGTAATCCTAAGAAGCACTCAAAAGAGACATGGAACAAAATAAAAAAATTTCTAGCTACTTCTCCTGGAAGATTGGCAATAATGAATACTCAGTGCAAGTACGAAGCAGGTATTGTGATTAAGAATATGTGCTTGAAAGATCATGCTTTGGGTGATGTCCTACAGATTTTGAGTTTAGCGATTTCCTATAAAAAATGGATTGTGCATCAACAATTGGGCTGGCAACCAGTTAACATCACCCTTGCAGAGAAATGTGATTCGGAGGTCATAGCATGCAAATAA 1875 0.4363 MGGGGAATAVAEAQYSLVKTSVWWDIENCQVPKGCDPHAIAQNISSALVRMNYCGPVSISAYGDTTGITASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRLRRYNILLAQPKKASAPLVAAAKSVWLWTSLLAGGPPLTNGESLQLGNNDIQSSSDSVQSPVHNAFQIPQYLESYSEVHTGNQKFPGTARQLDSRHHGKTNGRKSNKSNGPKVKNPAPVGLQENDGNINSPPPGNYTHNVPPSGSTPNFTLGIPDQMRVNNGNLQDNHQNPHSQPLRSNIFPLEPPFSPSNSFSLNSISFGTSVVPAWTGGPSFSAAPLTKVPDTGNISGYLSNAHDPHPVNQLNGDLERSSCSNSPNPVKSIDEADGHMIQNARNLYNGYAHGPEHRTSSSATVGNNNLPGNGMWGSPESPKSSEHVQDLIGVVLLALNILQTEKIKPTESNITDCIRFGDPKHRNTDVKKALEIAVEQQMVAKQNVGALELFVGKNDQVWKSVCTLGGNPKKHSKETWNKIKKFLATSPGRLAIMNTQCKYEAGIVIKNMCLKDHALGDVLQILSLAISYKKWIVHQQLGWQPVNITLAEKCDSEVIACK 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01485 624 Pfam OST-HTH Associated domain 560 618 IPR025677 -
Vian3g01485 624 PANTHER LIMKAIN B LKAP 16 501 IPR024768 GO:0005777|GO:0010468
Vian3g01485 624 Pfam NYN domain 19 155 IPR021139 GO:0004540
Vian3g01485 624 MobiDBLite consensus disorder prediction 418 446 - -
Vian3g01485 624 Gene3D - 15 162 - -
Vian3g01485 624 MobiDBLite consensus disorder prediction 254 309 - -
Vian3g01485 624 CDD PIN_limkain_b1_N_like 19 143 - -
Vian3g01485 624 MobiDBLite consensus disorder prediction 212 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01485 Vian-Chr3 16226740 16231024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01485 9 181 C2H2 Transcription Factor Family AT5G61190 75.145 8.22e-83 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01485 - - vun:114190919 1045.42