Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01484 ATGGGCGAAGGCGGAGCGGCGACGGCAGTTGCGGAGGCACAATACTCGTTGGTCAAGACTTCGGTTTGGTGGGACATAGAGAACTGTCAAGTGCCCAAAGGGTGCGATCCCCACGCCATCGCGCAGAATATAAGCTCCGCTCTCGTTCGGATGAATTATTGCGGCCCTGTTTCCATCTCTGCTTACGGTGACACCACTGGTATCACTGCCTCCGTCCAACATGCCCTCTCCAGCACCGGCATCTCCCTCAACCATGTCCCCGCCGGTGTTAAAGATGCAAGTGACAAAAAGATTCTTGTTGACATGTTATTCTGGGCTGTGGACAATCCTGCACCTGCTAATTACTTATTAATATCTGGTGATAGAGACTTTTCCAATGCTCTTCATCAGCTGCGGTTGAGGAGGTATAATATTCTTCTTGCACAGCCTAAGAAAGCTTCTGCACCCCTAGTAGCAGCTGCTAAGAGTGTGTGGCTTTGGACTAGTCTCTTGGCTGGAGGACCTCCCCTTACGAAGGGTGAATCACTACAACTTGCTAATAATGACATCCGATCCTCTTCTGACTCCATACAAAGTACAGTCCATAATGCCTTTCAGATACCGCAGTATCTGGAATCCTATTCAGAAGTTCATACTGGAAATCAGAAATTTCCTGGTACAGGAAGGCAACTTGATTCTAGACATCATGGGAAGACGAATGGGAAAAATTCAAGTAAACCAAATGGACCCAAGGTCTTGAATCCAGCTCCAGTTGGACTTCAAGAAAATTATGGCTATATAAGTTCTTCTCGACCTGGCAACTATACCCATGGTGTTCCCCCAAGTGGTTCTACTACAAATTTTGCCCATAATGTTCCCCCAAGTGAATCTACACCAAATTTTACCCATAATGTTCCCCCAAGTGGTTCTACTCCTAATTTTACTTGTGGCAATCCTGATCAAATGCGGGGCAATAATGGTACTCCACCAGGAAATCATCAAAATCCACATTCACAGGCATTAAGATCAAATTATTTTCCTTTGCAGCCTCCTTTTGCACCAAGCAGTTCATTTTTCCCAAATTCCCAAACTTTTGCAACTTCAGTAGTGCCAACTAGAACCTGTGGGCCCAGCTTTTCTGCAGCACCACTTACGAAGGTGCCAGATGTTGGTAATATTTATCCTAGTAACGCTCAGGATCCACACCCCGTTAAACATTTGAACGGGGACTTGAAACGGAGTTCTTGCAGTATTTCTTCAAATCCTATTATTAAGTCGATTGATGAACCACATGGGCACATGATACAGAATGCACAACATTTGTATAGTGGCCATTCACATGGTCCAAAACACCAACCTACATCAGCAACTGTGGGTAATAATAATCTTCCTGGTAATGGTATGTGGGGATCTCCAGGATTTCCTAAACCTTCTGAATACGTCCAAGGTCTTATAGGGGTTGTTTTACTTGCCTTGAACACACTAAAAACTGAAAAAATTATGCCAACTGAGTCAAATATAACGGATTGTATTCGATGTGGAGATCCCAAGCATCGCAGTACAGATGTCAAGAAGGCTCTGGAGAGTGCAGTTGAGCAGCAGATGGTGGTGAAGCAAAAAGTAGGTGCTTTGCGGTTGTTTGTTGGTAAGAATGATAAAGTTTGGAAGTGTGTAAACACTATAGGTGGTAATCCTAAGAAGCACTCAAAAGAGACGTGGAATGAAATTAAAAAATTTCTATCTACTTCTTCGGGAAGATTAGCAATAATGAGTACGCAGTGCAAGTAA 1767 0.4397 MGEGGAATAVAEAQYSLVKTSVWWDIENCQVPKGCDPHAIAQNISSALVRMNYCGPVSISAYGDTTGITASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRLRRYNILLAQPKKASAPLVAAAKSVWLWTSLLAGGPPLTKGESLQLANNDIRSSSDSIQSTVHNAFQIPQYLESYSEVHTGNQKFPGTGRQLDSRHHGKTNGKNSSKPNGPKVLNPAPVGLQENYGYISSSRPGNYTHGVPPSGSTTNFAHNVPPSESTPNFTHNVPPSGSTPNFTCGNPDQMRGNNGTPPGNHQNPHSQALRSNYFPLQPPFAPSSSFFPNSQTFATSVVPTRTCGPSFSAAPLTKVPDVGNIYPSNAQDPHPVKHLNGDLKRSSCSISSNPIIKSIDEPHGHMIQNAQHLYSGHSHGPKHQPTSATVGNNNLPGNGMWGSPGFPKPSEYVQGLIGVVLLALNTLKTEKIMPTESNITDCIRCGDPKHRSTDVKKALESAVEQQMVVKQKVGALRLFVGKNDKVWKCVNTIGGNPKKHSKETWNEIKKFLSTSSGRLAIMSTQCK 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01484 588 PANTHER LIMKAIN B LKAP 15 530 IPR024768 GO:0005777|GO:0010468
Vian3g01484 588 MobiDBLite consensus disorder prediction 212 334 - -
Vian3g01484 588 CDD PIN_limkain_b1_N_like 19 143 - -
Vian3g01484 588 Gene3D - 15 162 - -
Vian3g01484 588 Pfam NYN domain 19 155 IPR021139 GO:0004540
Vian3g01484 588 MobiDBLite consensus disorder prediction 256 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01484 Vian-Chr3 16214748 16218039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01484 9 181 C2H2 Transcription Factor Family AT5G61190 75.145 1.22e-83 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01484 - - vun:114190683 1029.24