Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01483 ATGGGCGAAGGCGGAGCGGCGACGGCAGTTGCGGAGGCACAATACTCGTTGGTCAAGACTTCGGTTTGGTGGGACATAGAGAACTGTCAAGTGCCCAAAGTGTGCGATCCCCACGCCATCGCGCAGAATATAAGCTCCGCTCTCGTTCGGATGAATTATTGCGGCCCTGTTTCCATCTCTGCTTACGGTGACACCACTGGTATCACTGCCTCCGTCCAACATGCCCTCTCCAGCACCGGCATCTCCCTCAACCATGTCCCCGCCGGTGTTAAAGATGCAAGTGACAAAAAGATTCTTGTTGACATGCTATTCTGGGCTGTGGACAATCCTGCACCTGCTAATTACTTATTAATATCTGGTGATAGAGACTTTTCCAATGCTCTTCATCAGCTGCGGTTGAGGAGGTATAATATTCTTCTTGCACAGCCTAAGAAAGCTTCTGCACCCCTAGTAGCAGCTGCCAAGAGTGTGTGGCTTTGGACTAGTCTCTTGGCTGGAGGACCTCCCCTTACGAAGGGTGAATCACTACAACTTGGTAATAATGACATCCAATCCTCTTCTGACTCCGTACAAAGTCCAGTCCATAATGCCTTTCAGATACCGCAGTATCTGGAATCCTATTCAGAAGTTCATACAGGAAATCAGAAATTTCCTGGTACAGCAAGGCAACTTGATTCTAGACATCATGGGAAGACAAATGGGAGAAAGTCAAATAAATCAAATGGACCCAAGGTCAAGAATCCAGCTCCAGTTGGACTTCAAGAAAATGATGGCAATATAAATTCTCCTCCACCTGGCAATTATACCCATAATGTTCCCCCAAGTGGTTCTACACCAAATTTTACTCTTGGCATTCCTGATCAAATGCGGGTCAATAATGGTAATCTACAAGACAATCATCAAAATCCACATTCACAACCATTAAGATCAAATATTTTTCCTTTGGAGCCTCCTTTTTCACCAAGCAATTCATTTTCTCTAAATTCCATAAGTTTTGGAACTTCAGTAGTGCCGGCTTGGACTGGTGGGCCCAGCTTCTCTGCAGCACCACTTACGAAGGTACCAGATACTGGTAATATTTCTGGATATCTTAGTAATGCTCACGATCCGCATCCTGTTAATCAATTGAACGGGGACTTGGAACGGAGTTCTTGCAGTAATTCTCCAAATCCTGTTAAATCTATTGATGAAGCAGATGGGCACATGATACAGAACGCACGAAATTTGTATAATGGCTATGCACATGGGCCAGAACACCGAACTTCATCATCAGCAACCGTGGGTAATAATAATCTTCCAGGTAATGGTATGTGGGGATCGCCAGAATCTCCTAAATCTTCTGAGCACGTCCAAGATCTTATAGGGGTTGTTTTACTTGCCTTGAACATACTGCAAACTGAAAAAATTAAGCCAACTGAGTCAAATATAACAGATTGTATTCGATTTGGAGATCCCAAGCATCACAATACAGATGTCAAGAAGGCTTTGGAGATTGCTGTTGAGCAGCAGATGGTAGCGAAGCAAAATGTTGGTGCTTTGGAGTTGTTTGTTGATAAGAATGATCAAGTTTGGAAGTCTGTATGCACTCTGGGTGGTAATCCTAAGAAGCACTCAAAAAAGACATGGAACAAAATAAAAAAATTTCTAGCTACTTCTCGTGGAAGATTGGCAATAATGAATACTCAGTGCAAGTACGAAGCAGGTATTGTGATTAAGAATATGTGCTTGAAAGATCATGCTTTGGGTGATGTCCTACAGATTTTGAGTTTAGCGATTTCCTATAAAAAATGGATTGTGCATCAACAATTGGGCTGGCAACCAGTTAACATCACCTTGCATAGAAATGTGATTCAGAGGTCATAG 1863 0.4321 MGEGGAATAVAEAQYSLVKTSVWWDIENCQVPKVCDPHAIAQNISSALVRMNYCGPVSISAYGDTTGITASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRLRRYNILLAQPKKASAPLVAAAKSVWLWTSLLAGGPPLTKGESLQLGNNDIQSSSDSVQSPVHNAFQIPQYLESYSEVHTGNQKFPGTARQLDSRHHGKTNGRKSNKSNGPKVKNPAPVGLQENDGNINSPPPGNYTHNVPPSGSTPNFTLGIPDQMRVNNGNLQDNHQNPHSQPLRSNIFPLEPPFSPSNSFSLNSISFGTSVVPAWTGGPSFSAAPLTKVPDTGNISGYLSNAHDPHPVNQLNGDLERSSCSNSPNPVKSIDEADGHMIQNARNLYNGYAHGPEHRTSSSATVGNNNLPGNGMWGSPESPKSSEHVQDLIGVVLLALNILQTEKIKPTESNITDCIRFGDPKHHNTDVKKALEIAVEQQMVAKQNVGALELFVDKNDQVWKSVCTLGGNPKKHSKKTWNKIKKFLATSRGRLAIMNTQCKYEAGIVIKNMCLKDHALGDVLQILSLAISYKKWIVHQQLGWQPVNITLHRNVIQRS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01483 620 Pfam NYN domain 19 155 IPR021139 GO:0004540
Vian3g01483 620 PANTHER LIMKAIN B LKAP 15 505 IPR024768 GO:0005777|GO:0010468
Vian3g01483 620 MobiDBLite consensus disorder prediction 212 308 - -
Vian3g01483 620 MobiDBLite consensus disorder prediction 418 446 - -
Vian3g01483 620 CDD PIN_limkain_b1_N_like 19 143 - -
Vian3g01483 620 Gene3D - 15 162 - -
Vian3g01483 620 MobiDBLite consensus disorder prediction 254 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01483 Vian-Chr3 16191154 16195416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01483 9 181 C2H2 Transcription Factor Family AT5G61190 74.566 3.05e-81 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01483 - - vun:114190919 1014.99