Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01471 ATGGGTGGTAGCGTTATTCCACTCTTGGCCATGATTGTTGTACAATTGAGTTATGCAGGAATGAATATTTCCTCAAAGCTTGCAATACAATCTGGCATGCACCCTCTTGTCCTTGTTGCTTATCGTCAAATTTTTGCCACTTTCTCCTTAGCTCCTTTTGCTTATTGCTTTGAACGGAATACGGCTCCCCCAATGACAAAGCGAATTGCGTTCCAGATATTATTATCTTCCTTAACAGGAATTACAGGAAATCAGATACTATATTTCTTGGGTCTTAAATATTCAACCGCTACAATTGCATGTGCACTAAACAACTTGCTCCCAGCATTCACTTTCGTTCTTGCAGTTCTCTTCGGACAAGAGTGTTTGAGGATCAAGACAAAGGCTGGGGTAGCGAAGGTGTTTGGGACAATCCTTGGTGTGGGTGGAGCAGTTGTTCTATCTTTTTACCATGGAAAACTCCTTGGTCTAGGTGAGTCAAAAATTCAATGGAAATATGCTGAGAAAATGGAAGGAGGAGCCTCCTCTCGCGGTGAAACAAACTTGCTTCTGGGTCCTGTTTCTGTAATTTGTAGCGCTCTTCTTTGGGCAGTATGGTTCATAATTCAAGCAAATATAAGCAGGAGCTACCCAGTTCCTTTTACCAGCAGTTTCTACATGTGTTTGATGGCAAGCATTCAGTGTTTGGTCATTGCCTTGTCTGTCCAACACGAGGCCTCAGCTTGGTCACTGTACAGTACAATAAGACTTACCTCTGCACTTTATGCGGGAATTATTTCAACTGGGCTAACGTATTCGCTCCTCTCGTGGTCTATCGAGAAGAAAGGTCCTCTCTATGCGTCTGTGTTCTCCCCTTTGCAGCTTGTCATCATTGCTGTTGTTAGCTGGGCACTACTGCACGAAAAAATATACATTGGCACTGCGATAGGGTCTCTGGTGATAGTGTTTGGGCTGTATTTTGTGTTGTTGGGAAAGAACAAAGATGTGGATGAGAATGACGGTGTTGATGAGATAACGGAGGCAATGGAGGATGATGTGAAAGACCTGGAATTGGAACCCTATAATCCTTTCAACGGTAACGGAAAGCATCATGAAGAAGATGATAAAAGGAAAGGGAAGGTGACAGGCAGAGGATTCGACGCAGATTAG 1149 0.4343 MGGSVIPLLAMIVVQLSYAGMNISSKLAIQSGMHPLVLVAYRQIFATFSLAPFAYCFERNTAPPMTKRIAFQILLSSLTGITGNQILYFLGLKYSTATIACALNNLLPAFTFVLAVLFGQECLRIKTKAGVAKVFGTILGVGGAVVLSFYHGKLLGLGESKIQWKYAEKMEGGASSRGETNLLLGPVSVICSALLWAVWFIIQANISRSYPVPFTSSFYMCLMASIQCLVIALSVQHEASAWSLYSTIRLTSALYAGIISTGLTYSLLSWSIEKKGPLYASVFSPLQLVIIAVVSWALLHEKIYIGTAIGSLVIVFGLYFVLLGKNKDVDENDGVDEITEAMEDDVKDLELEPYNPFNGNGKHHEEDDKRKGKVTGRGFDAD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01471 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 141 - -
Vian3g01471 382 Pfam EamA-like transporter family 7 147 IPR000620 GO:0016020
Vian3g01471 382 Pfam EamA-like transporter family 184 322 IPR000620 GO:0016020
Vian3g01471 382 PANTHER WAT1-RELATED PROTEIN 7 329 IPR030184 GO:0016020|GO:0022857
Vian3g01471 382 MobiDBLite consensus disorder prediction 343 382 - -
Vian3g01471 382 MobiDBLite consensus disorder prediction 359 382 - -
Vian3g01471 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 224 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01471 Vian-Chr3 16074874 16076708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01471 5 326 Nodulin-like Gene Family AT1G09380 55.590 2.94e-129 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01471 - - var:108325504 754.207