Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01463 ATGGTGCCGAAGCCTAAAACCGAAGGTGCATCGGGTTCCGCCGCCTTCTTCAAACCAGGTACTGTGGTGGAAGTCAGCTCTGAGGATGAAGGCTTCCGTGGCTCCTGGTTTTCCGGCACCATCATCCGCCATCTTGCTTCTGACAGGTTCCTAGTAGAGTACCACAACCTGATGGCAGACGATAAAAGCTCAAAGCATTTGAGGGAAATCTTGCATATGCGTCAACTGCGGCCCATCCTCCCACCAGAGACAGGCCAAATATTCAAATTTGGGGATGAGGTTGACGCATTCTACAACGACGGTTGGTGGGAGGGATTTATAACTGAGGAATTAGAGAATGACAGATTTGCAGTGTATTTCAGGGCGTCCAAGGAGCAATTAGTGTTTTTCAAAGAACAACTCAGAATCCATCGAGAATGGTTCGATCACAAATGGGTCCCGCCACTCCAACAGAAAAACGATGAATCTAATGAAGCTGCAAAGCCAGATGAATCTAATGAAGCTGCAAAGCCAGATGAATCTAATGAAGCTGCAAAGCCAGATGAATTTGTCCAAGGGGCTATAGTCGAGGTTAGCAGTGATGAAGAGGGGTTCAGTGGAGCTTGGTTTGAAGCCACTATTGTTGAAGCAAAGGGAAATGACAAGTTCCTTGTTGAGTACCAGACTCTGTTAGCCGATGATGATTCTAATCTTTTGAGAGAGGAGATTGATGTCTTTCACATAAGGCCTCCTCCGCCCAATACTAATGTTGACGGTCAATTCAATCTTCTTGACGAAGTGGATGCCCTGTACAATGACGGTTGGTGGGTGGGTGTGATTTCAAAAGTTCTTGCCGACTCCAAGTATGTGATTTATTTCAGGTCTTCTAACGAGGAACTAGAGTTTCATCACTCCCATTTGAGGCTGCATCAGGACTGGATTCATGGAAAATGGGTTATGCCTTCTAAGGTATGCACAGTATTTACTGAAACTCTCTGA 978 0.4581 MVPKPKTEGASGSAAFFKPGTVVEVSSEDEGFRGSWFSGTIIRHLASDRFLVEYHNLMADDKSSKHLREILHMRQLRPILPPETGQIFKFGDEVDAFYNDGWWEGFITEELENDRFAVYFRASKEQLVFFKEQLRIHREWFDHKWVPPLQQKNDESNEAAKPDESNEAAKPDESNEAAKPDEFVQGAIVEVSSDEEGFSGAWFEATIVEAKGNDKFLVEYQTLLADDDSNLLREEIDVFHIRPPPPNTNVDGQFNLLDEVDALYNDGWWVGVISKVLADSKYVIYFRSSNEELEFHHSHLRLHQDWIHGKWVMPSKVCTVFTETL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01463 325 CDD Tudor_Agenet_AtDUF_rpt2_4 256 302 - -
Vian3g01463 325 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 168 316 - -
Vian3g01463 325 CDD Tudor_Agenet_AtDUF_rpt1_3 183 246 - -
Vian3g01463 325 Gene3D - 171 254 - -
Vian3g01463 325 CDD Tudor_Agenet_AtDUF_rpt2_4 91 136 - -
Vian3g01463 325 SMART agenet_At_2 181 249 IPR014002 -
Vian3g01463 325 SMART agenet_At_2 86 142 IPR014002 -
Vian3g01463 325 SMART agenet_At_2 15 84 IPR014002 -
Vian3g01463 325 SMART agenet_At_2 252 308 IPR014002 -
Vian3g01463 325 MobiDBLite consensus disorder prediction 156 179 - -
Vian3g01463 325 CDD Tudor_Agenet_AtDUF_rpt1_3 17 81 - -
Vian3g01463 325 MobiDBLite consensus disorder prediction 152 181 - -
Vian3g01463 325 Pfam Agenet domain 20 81 IPR008395 -
Vian3g01463 325 Pfam Agenet domain 186 246 IPR008395 -
Vian3g01463 325 Pfam Agenet domain 91 149 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01463 Vian-Chr3 16024934 16026032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01463 193 306 PHD Transcription Factor Family AT5G58610 31.111 2.24e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01463 - - vum:124823040 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01463 3 16024934 16026032 Vian3g01463 3 16024934 16026032 ECH