Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01458 ATGGAGTCTTTTGAGCCCAACGTAGATTCAAGTAATTCAGAAACGTTGCGAGAATCTAATCAAAAGAAGCGCAGGAAAATCGGAGACCACGCCGCCGATCACAATTCCGCCAACGCTGTCCCTTGGAGATCCGAGGCGGAGCAACGGATCTACTCTCGCCGCCTCGTCGAGGCTCTCCGCCGGACTCCATCATCGGTTGCCAGGCCTGCGGCCGCCGGCCAGGTCCACGAGACCGCAGACCGAATTCTCGCCGCCACCGCCAGAGGCCGAACGCGGTGGAGTCGCGCGATTCTCGGCCGGTGGAGGAAGCTCCGCACGCAGCACAAGAAGGCGAAGAAGACATCGTCCACCGGATTGAAGAGAACGAGGATCAACAGCGGAGAGAGGAGGAACCGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGGTTCCCGGTTGCCGGAAGGTCTCGTTCCCAAACCTTCTGGAAGAAGCCACGGACTATATCTCCGCCTTGGAGATGCAAGTGCGAACCATGACGGCTCTAGCAGAATTACTCTCCGGCGGTGCTCCGGCTGGTATAGACGGTGGCGCGTTGAGTTGA 594 0.5926 MESFEPNVDSSNSETLRESNQKKRRKIGDHAADHNSANAVPWRSEAEQRIYSRRLVEALRRTPSSVARPAAAGQVHETADRILAATARGRTRWSRAILGRWRKLRTQHKKAKKTSSTGLKRTRINSGERRNRLPAVQKKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRTMTALAELLSGGAPAGIDGGALS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01458 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Vian3g01458 197 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 43 183 IPR044660 GO:0006355
Vian3g01458 197 MobiDBLite consensus disorder prediction 1 15 - -
Vian3g01458 197 MobiDBLite consensus disorder prediction 1 41 - -
Vian3g01458 197 MobiDBLite consensus disorder prediction 16 32 - -
Vian3g01458 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 185 IPR036638 GO:0046983
Vian3g01458 197 CDD bHLH_AtIBH1_like 128 180 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01458 Vian-Chr3 15975718 15976311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01458 1 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 41.146 5.16e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01458 - - gmx:100783462 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01458 3 15975718 15976311 Vian3g01458 3 15975718 15976311 ECH